View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_41 (Length: 291)

Name: NF1433_low_41
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_41
NF1433_low_41
[»] chr4 (24 HSPs)
chr4 (1-193)||(30049230-30049417)
chr4 (1-183)||(30063571-30063750)
chr4 (212-284)||(31840095-31840165)
chr4 (212-284)||(29584891-29584963)
chr4 (212-284)||(56373380-56373452)
chr4 (212-283)||(20185693-20185764)
chr4 (219-291)||(10541286-10541358)
chr4 (212-284)||(22651461-22651533)
chr4 (212-284)||(22750878-22750950)
chr4 (212-284)||(38136352-38136424)
chr4 (212-291)||(12624693-12624772)
chr4 (212-284)||(14602691-14602763)
chr4 (219-291)||(33246526-33246598)
chr4 (212-284)||(37175058-37175129)
chr4 (212-284)||(41920074-41920146)
chr4 (212-291)||(20262423-20262502)
chr4 (212-291)||(31486485-31486564)
chr4 (212-291)||(39237618-39237697)
chr4 (212-291)||(50782775-50782854)
chr4 (212-282)||(19654425-19654495)
chr4 (219-284)||(3094186-3094251)
chr4 (212-289)||(45079842-45079919)
chr4 (212-291)||(7002179-7002259)
chr4 (1-33)||(30219702-30219734)
[»] chr8 (15 HSPs)
chr8 (212-285)||(14522640-14522713)
chr8 (212-291)||(16644066-16644145)
chr8 (212-291)||(14577682-14577761)
chr8 (212-291)||(26878758-26878837)
chr8 (212-284)||(31746442-31746514)
chr8 (212-291)||(25198286-25198365)
chr8 (212-284)||(38770224-38770296)
chr8 (212-291)||(12998723-12998802)
chr8 (212-291)||(24962395-24962474)
chr8 (212-289)||(57220-57297)
chr8 (219-284)||(34869834-34869899)
chr8 (212-284)||(5191586-5191657)
chr8 (212-284)||(7172216-7172288)
chr8 (212-284)||(22590372-22590444)
chr8 (219-291)||(36437505-36437577)
[»] chr6 (12 HSPs)
chr6 (219-291)||(3729393-3729465)
chr6 (212-284)||(31945949-31946021)
chr6 (212-291)||(1763810-1763889)
chr6 (212-289)||(5895728-5895805)
chr6 (229-290)||(10669305-10669366)
chr6 (224-284)||(12514622-12514682)
chr6 (212-284)||(15981791-15981863)
chr6 (212-291)||(11081893-11081972)
chr6 (212-291)||(19838928-19839007)
chr6 (213-278)||(28238357-28238422)
chr6 (229-289)||(10260619-10260679)
chr6 (212-284)||(22410880-22410952)
[»] chr2 (18 HSPs)
chr2 (212-284)||(24774862-24774934)
chr2 (212-284)||(8384008-8384080)
chr2 (212-291)||(4033578-4033657)
chr2 (212-291)||(17663621-17663700)
chr2 (212-291)||(20361980-20362059)
chr2 (212-284)||(3645320-3645392)
chr2 (212-284)||(7257974-7258046)
chr2 (212-284)||(44421446-44421518)
chr2 (212-291)||(9718201-9718280)
chr2 (220-291)||(14420682-14420753)
chr2 (212-291)||(21012850-21012929)
chr2 (212-291)||(27297574-27297653)
chr2 (212-291)||(44424592-44424671)
chr2 (219-289)||(25731602-25731671)
chr2 (224-284)||(4398560-4398620)
chr2 (212-284)||(28264987-28265059)
chr2 (212-284)||(37355033-37355105)
chr2 (219-291)||(43650038-43650110)
[»] chr7 (10 HSPs)
chr7 (212-291)||(26200997-26201076)
chr7 (212-291)||(48193612-48193691)
chr7 (182-284)||(6376169-6376273)
chr7 (212-291)||(10685082-10685161)
chr7 (212-291)||(31373727-31373806)
chr7 (212-284)||(40211313-40211385)
chr7 (212-284)||(46783877-46783949)
chr7 (212-291)||(20123447-20123526)
chr7 (212-291)||(37048032-37048111)
chr7 (212-282)||(40740947-40741017)
[»] chr3 (23 HSPs)
chr3 (212-284)||(11388117-11388189)
chr3 (212-291)||(14645920-14645999)
chr3 (212-291)||(27638108-27638187)
chr3 (212-289)||(11344554-11344631)
chr3 (212-284)||(29676777-29676849)
chr3 (212-291)||(831391-831470)
chr3 (219-282)||(22659583-22659646)
chr3 (212-291)||(42010864-42010943)
chr3 (212-291)||(46048518-46048597)
chr3 (212-291)||(46435761-46435840)
chr3 (212-291)||(52325534-52325613)
chr3 (224-282)||(44083635-44083693)
chr3 (224-285)||(33412010-33412071)
chr3 (212-291)||(20945331-20945410)
chr3 (212-291)||(41740004-41740083)
chr3 (212-291)||(43187124-43187203)
chr3 (212-282)||(13084398-13084468)
chr3 (212-289)||(26517248-26517325)
chr3 (212-284)||(12077781-12077853)
chr3 (219-291)||(25750530-25750602)
chr3 (219-291)||(26121335-26121407)
chr3 (212-284)||(27047216-27047288)
chr3 (255-291)||(50525007-50525043)
[»] chr5 (16 HSPs)
chr5 (212-291)||(3559055-3559134)
chr5 (212-291)||(10523302-10523381)
chr5 (229-289)||(129624-129684)
chr5 (212-279)||(7510603-7510670)
chr5 (212-275)||(18729585-18729648)
chr5 (212-291)||(35569033-35569112)
chr5 (219-284)||(36177296-36177361)
chr5 (212-284)||(5845173-5845245)
chr5 (212-284)||(20946084-20946156)
chr5 (212-283)||(4738627-4738698)
chr5 (212-291)||(21574908-21574987)
chr5 (212-283)||(36347637-36347708)
chr5 (212-291)||(39690514-39690593)
chr5 (219-284)||(32067832-32067897)
chr5 (228-284)||(9375674-9375730)
chr5 (212-276)||(11980713-11980777)
[»] chr1 (27 HSPs)
chr1 (212-291)||(13723506-13723585)
chr1 (212-284)||(38680471-38680543)
chr1 (212-291)||(4813490-4813569)
chr1 (212-291)||(30336055-30336134)
chr1 (212-291)||(32152154-32152233)
chr1 (221-284)||(41737130-41737193)
chr1 (212-284)||(2342900-2342972)
chr1 (212-284)||(35366019-35366091)
chr1 (212-291)||(15512809-15512888)
chr1 (212-271)||(23393560-23393619)
chr1 (212-291)||(25258326-25258405)
chr1 (219-282)||(28723690-28723753)
chr1 (212-291)||(28948992-28949071)
chr1 (212-291)||(30898591-30898670)
chr1 (212-275)||(36084966-36085029)
chr1 (212-291)||(44335285-44335364)
chr1 (219-281)||(15911590-15911652)
chr1 (212-282)||(31808009-31808079)
chr1 (212-291)||(44652889-44652965)
chr1 (219-284)||(47754677-47754742)
chr1 (212-249)||(52141247-52141284)
chr1 (212-284)||(8877768-8877840)
chr1 (212-284)||(8984696-8984768)
chr1 (212-284)||(16582529-16582601)
chr1 (212-284)||(32047438-32047510)
chr1 (212-291)||(47643538-47643615)
chr1 (211-291)||(50692404-50692484)
[»] scaffold1091 (1 HSPs)
scaffold1091 (212-291)||(1942-2021)
[»] scaffold0005 (1 HSPs)
scaffold0005 (212-284)||(214615-214687)
[»] scaffold0038 (1 HSPs)
scaffold0038 (213-278)||(38519-38584)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 30049230 - 30049417
Alignment:
Q  1 tcttcattgaatttgtccattatgttgtggtgtgtgtgcatgcatgcaagagcnnnnnnnnnnnntatttgatgtaggacttcagttagacaatttgctg 100  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||              |||||||||||||||||||||||||| ||||||     
T  30049230 tcttcattgaatttgtccattatggtgtggtgtgtatgc-tgcatgcaagagagagagagag----atttgatgtaggacttcagttagacactttgcta 30049324  T
Q  101 cataaagcataaggtggcaccataatttatacaagtatggtacttgaacaactttcttaggtaatttatgagacaaacaaatactccatccgt 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  30049325 cataaagcataaggtggcaccataatttatacaagtatggtacttgaacaactttcttaggtaatttatgagacaatcaaatacttcatccgt 30049417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 30063571 - 30063750
Alignment:
Q  1 tcttcattgaatttgtccattatgttgtggtgtgtgtgcatgcatgcaagagcnnnnnnnnnnnntatttgatgtaggacttcagttagacaatttgctg 100  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||              |||||||||||||||||||||||||| ||||||     
T  30063571 tcttcattgaatttgtccattatggtgtggtgtgtatgc-tgcatgcaagagagagagagag----atttgatgtaggacttcagttagacactttgcta 30063665  T
Q  101 cataaagcataaggtggcaccataatttatacaagtatggtacttgaacaa-ctttc-ttaggtaatttatgagacaaacaaata 183  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||| |||| ||||| ||||||    
T  30063666 cataaagcataaggtggcaccataatttatacaagtatggtacctgaacaacctttctttaggtaatctatgggacaaccaaata 30063750  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 31840095 - 31840165
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| ||||||||||||| ||  || |||||||| ||||||||||||||||||    
T  31840095 ttttcaaatttcttaagaaaaattgttagtgtaattaatgt--attttttgtgtgttaatattaccaaattgt 31840165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 29584891 - 29584963
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| ||||||||||||| ||   |||| ||||| ||||||||||||||||||    
T  29584891 ttttcacatttcttaagaaaaattgttagtgtaattaatgtgtctattctgtgtgttaatattaccaaattgt 29584963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 56373452 - 56373380
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| |||||| |||||| ||   |||||||||| ||||||||||||||||||    
T  56373452 ttttcacatttcttaagaaaaattgttagtgcaattaatgtgtttattttgtgtgttaatattaccaaattgt 56373380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 20185764 - 20185693
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattg 283  Q
    |||||| |||||||||||||| || ||||||||||||| || ||  |||||||| |||||||||||||||||    
T  20185764 ttttcacatttcttaagaaaatttgttagtgtaattaatgtgcaagttttgtgtgttaatattaccaaattg 20185693  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 10541358 - 10541286
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||| || ||| || |||||| ||| |||||||||||||||||||||||||||| | ||||||    
T  10541358 atttctaaagaaaagttgttaatgcaattaatgtatatattttgtgtattaatattaccaaattatcctttgt 10541286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 22651461 - 22651533
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| |||||| ||||||||| ||   |||||||| | ||||||||||||||||||    
T  22651461 ttttcacatttcttaagaaaatttattaatgtaattaatgtgtttattttgtatgttaatattaccaaattgt 22651533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 22750950 - 22750878
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || |  |||||||||| |||  | |||||||||||||||||||||||||||    
T  22750950 ttttcacatttcttaagaaaagttgtctgtgtaattaatgtatctgttttgtgtattaatattaccaaattgt 22750878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 38136352 - 38136424
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||||||||||| ||   |||||||||| ||||||||| ||||||||    
T  38136352 ttttcacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattgt 38136424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 12624693 - 12624772
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||||||||||||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  12624693 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgactattttatgtgttaatattactaaattgtcctttgt 12624772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 14602763 - 14602691
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||||||||||| ||   || ||| ||| ||||||||||||||||||    
T  14602763 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatattaccaaattgt 14602691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 33246598 - 33246526
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||| ||||||||| || |||||||||||||| |   |||||||||| |||||||||||||||| | ||||||    
T  33246598 attttttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatattaccaaattatcctttgt 33246526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 37175129 - 37175058
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || || |||||||||| ||   |||||||||| ||||||||||||||||||    
T  37175129 ttttcacatttcttaagaaaagttgtt-gtgtaattaatgtgtctattttgtgtgttaatattaccaaattgt 37175058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 41920146 - 41920074
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || |||||| ||||||  |   |||||||||| ||||||||||||||||||    
T  41920146 ttttcacatttcttaagaaaagttgttagtgcaattaatatttctattttgtgtgttaatattaccaaattgt 41920074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 20262502 - 20262423
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||| |||||||| |||||    
T  20262502 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgttatttgt 20262423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 31486485 - 31486564
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||| |||||| ||   |||||||||| |||||||||| ||||| | ||||||    
T  31486485 ttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttgtgtgttaatattactaaattatcctttgt 31486564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 39237697 - 39237618
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||| ||||||||| || | ||||||||||| |||  | |||||||| |||||||||| ||||||| ||||||    
T  39237697 ttttcacattttttaagaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaatattacgaaattgtcctttgt 39237618  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 50782775 - 50782854
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||| ||||||| ||||||    
T  50782775 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtcttaatattacgaaattgtcctttgt 50782854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 19654425 - 19654495
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    |||||| ||||||||||||||| | ||||||||||||| ||   |||||| ||| || |||||||||||||    
T  19654425 ttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctattttatgtgttgatattaccaaatt 19654495  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 3094186 - 3094251
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||| || |||  |||||||| ||   |||||||||| ||||||||||||||||||    
T  3094186 atttcttaagaaaagttgttaaagtaattaatgtgtctattttgtgtgttaatattaccaaattgt 3094251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 45079919 - 45079842
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||||| |||||||||||||| |  |||||| ||||||  ||  |||||||||| ||||||||| |||||| ||||||    
T  45079919 ttttcacatttcttaagaaaagtagttagtgcaattaacatatctattttgtgtgttaatattagcaaattattcttt 45079842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 7002179 - 7002259
Alignment:
Q  212 ttttcatatttctt-aagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||| |||||||||| ||| || |||||| ||  ||||||| ||| |||||||||||||||| | ||||||    
T  7002179 ttttcacatttctttaagaaaaattgttaatgcaattaatgtttatattttatgtgttaatattaccaaattatcctttgt 7002259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30219734 - 30219702
Alignment:
Q  1 tcttcattgaatttgtccattatgttgtggtgt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  30219734 tcttcattgaatttgtccattatgctgtggtgt 30219702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 14522713 - 14522640
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgtt 285  Q
    |||||| ||||||||||||||||| ||||||||||||| ||  || |||||||| |||||||||||||||||||    
T  14522713 ttttcacatttcttaagaaaaattgttagtgtaattaatgtgtatgttttgtgtgttaatattaccaaattgtt 14522640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 16644145 - 16644066
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||||||||||||| ||  ||||||||||| ||||||| || ||||||||||||||    
T  16644145 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtatattttgtgtgttaatatcactaaattgttctttgt 16644066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 14577761 - 14577682
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||||||||||||| ||   |||||||| | |||||||||||||||||| ||||||    
T  14577761 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtttgttaatattaccaaattgtactttgt 14577682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 26878837 - 26878758
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||| ||||||||| ||   |||||||||| |||||||||||||||||| ||||||    
T  26878837 ttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgt 26878758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 31746514 - 31746442
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| |||||| |||||| ||   |||||||||| |||||||||| |||||||    
T  31746514 ttttcacatttcttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattacaaaattgt 31746442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 25198286 - 25198365
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||||||||||| ||||||    
T  25198286 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattaccaaattgtcctttgt 25198365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 38770296 - 38770224
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||||||| || || | ||||||||||| ||   |||||||||| |||||||||| |||||||    
T  38770296 ttttcatatttcttaagataagttgtcagtgtaattaatgtgtttattttgtgtgttaatattacgaaattgt 38770224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 12998802 - 12998723
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | |||  |||||| || |||||||||||| | |||||||| ||||||| ||||||    
T  12998802 ttttcacatttcttaagaaaagttgtcagttcaattaatgtgcatattttgtgtgtgaatattactaaattgtcctttgt 12998723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 24962474 - 24962395
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||||| |||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  24962474 ttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgt 24962395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 57297 - 57220
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||||| |||||||||||||| || |  |||||||||| ||   | |||||||| |||||||||| ||||||||||||    
T  57297 ttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgttcttt 57220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 34869834 - 34869899
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||| |||||||||||| |  |||||| ||| ||  ||||||||||||||||||||| ||||||||    
T  34869834 attttttaagaaaaattgtcggtgtaactaatgtgtatattttgtgtattaatattatcaaattgt 34869899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 5191657 - 5191586
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| |||| | |||||| ||   | |||||||| ||||||||||||||||||    
T  5191657 ttttcacatttcttaagaaaaattgttag-gcaattaatgtgtctgttttgtgtgttaatattaccaaattgt 5191586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 7172216 - 7172288
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || || |||||||||| ||   |||||||||| |||||||||  |||||||    
T  7172216 ttttcacatttcttaagaaaactttttggtgtaattaatgtgtctattttgtgtgttaatattataaaattgt 7172288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 22590372 - 22590444
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || |||||| |||||| ||   |||||| ||| ||||||| ||||||||||    
T  22590372 ttttcacatttcttaagaaaatttgttagtgcaattaatgtgtctattttttgtgttaatatcaccaaattgt 22590444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 36437505 - 36437577
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||| |||||||||| | |||||| |||||| ||   |||||||||| |||| ||||||||||||| ||||||    
T  36437505 attttttaagaaaaaatgttagtgcaattaatgtgtctattttgtgtgttaacattaccaaattgtcctttgt 36437577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 3729393 - 3729465
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||||||||| || |||||||||| ||   |||||||||| |||||||||||||||||||||||||    
T  3729393 atttcttaagaaaaattgttggtgtaattaatgtgtctattttgtgtgttaatattaccaaattgttctttgt 3729465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 31946021 - 31945949
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||||||||||| ||   |||||||||| ||||||||||||||||||    
T  31946021 ttttcacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattgt 31945949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 1763810 - 1763889
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||| ||||||| ||||||    
T  1763810 ttttcatatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgtcctttgt 1763889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 5895728 - 5895805
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||||| |||||||||||||| || ||| ||||||||| ||   | ||||||||||||||||||| ||||||| ||||    
T  5895728 ttttcacatttcttaagaaaagttgttaatgtaattaatgtgtctgttttgtgtattaatattacgaaattgtccttt 5895805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 10669366 - 10669305
Alignment:
Q  229 aaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttg 290  Q
    ||||||| |||||| |||||| ||   |||||||||| ||||||||||||||||||||||||    
T  10669366 aaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgttctttg 10669305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 12514682 - 12514622
Alignment:
Q  224 ttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||| |||||| |||||| ||   |||||||||| ||||||||||||||||||    
T  12514682 ttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgt 12514622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 15981791 - 15981863
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || || |||||||||| ||   | |||||||| ||||||||||||||||||    
T  15981791 ttttcacatttcttaagaaaagttgttggtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgt 15981863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 11081893 - 11081972
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| || ||||||||||| || |||||||||||||  ||  |||||| ||||||||| |||||||||| | ||||||    
T  11081893 ttttcacatatcttaagaaaagttgttagtgtaattaatatatctattttctgtattaatgttaccaaattatcctttgt 11081972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 19838928 - 19839007
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||||| |||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  19838928 ttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgt 19839007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 28238422 - 28238357
Alignment:
Q  213 tttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattacca 278  Q
    ||||| ||||||||| ||||||| ||||| ||||||| ||   |||||||||| ||||||||||||    
T  28238422 tttcacatttcttaataaaaattgttagtataattaatgtgtctattttgtgtgttaatattacca 28238357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 10260679 - 10260619
Alignment:
Q  229 aaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    ||||||| ||| ||||||||| |||  |||||| |||||||||||||| ||||| ||||||    
T  10260679 aaaaattgttaatgtaattaacgtatctattttatgtattaatattactaaattattcttt 10260619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 22410952 - 22410880
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||||||||||| ||   | |||| | | ||||||||||||||||||    
T  22410952 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttttatgttaatattaccaaattgt 22410880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 24774862 - 24774934
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||| ||||||||| |||||||||||||||| |||  |||||||||| ||||||||||||||||||    
T  24774862 ttttcacattttttaagaaaatttattagtgtaattaatgtatctattttgtgtgttaatattaccaaattgt 24774934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 8384080 - 8384008
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||||||||||||  |||||| |||||| ||   |||||||||| ||||||||||||||||||    
T  8384080 ttttcatatttcttaagaaaaatagttagtgcaattaatgtgtttattttgtgtgttaatattaccaaattgt 8384008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 4033578 - 4033657
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||| |||||||||||||||| |||||||||||||||| ||   | |||| ||| |||||||||| ||||||||||||||    
T  4033578 tttttatatttcttaagaaaagttattagtgtaattaatgtttctgttttctgtgttaatattactaaattgttctttgt 4033657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 17663621 - 17663700
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||||||||||||| || | |||||| ||| |||||||||| ||||||| ||||||    
T  17663621 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgcctattttatgtgttaatattactaaattgtcctttgt 17663700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 20361980 - 20362059
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||||||||| |||||||| |||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  20361980 ttttcacatttcttaagaaaaattgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgt 20362059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 3645320 - 3645392
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||| || |||| ||   ||||||||||||||||||||| |||||||    
T  3645320 ttttcacatttcttaagaaaagttgttagtttacttaatgtgtctattttgtgtattaatattactaaattgt 3645392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 7258046 - 7257974
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||||| |||||||||||||||| ||||||||| ||   | ||| ||||||||||||||  |||||||    
T  7258046 ttttcatattttttaagaaaaattattaatgtaattaatgtgtttgtttagtgtattaatattattaaattgt 7257974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 44421446 - 44421518
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| | ||||||||||| |||  | |||||| | |||||||||| |||||||    
T  44421446 ttttcacatttcttaagaaaaattgtcagtgtaattaatgtatctgttttgtttgttaatattactaaattgt 44421518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 9718280 - 9718201
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||  || | ||||||||||| ||   | |||||||| |||||||||||||||| ||||||||    
T  9718280 ttttcacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattattctttgt 9718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 14420682 - 14420753
Alignment:
Q  220 tttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||| ||||||| || ||||||||||||| ||   | |||||||| |||||||||||||||||| ||||||    
T  14420682 tttctaaagaaaagttgttagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttgt 14420753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 21012850 - 21012929
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||| |||||| ||   |||||||||| ||||||||| |||||| | ||||||    
T  21012850 ttttcaaatttcttaagaaaagttgttagtgcaattaatgtgtttattttgtgtgttaatattatcaaattatcctttgt 21012929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 27297574 - 27297653
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||||||| | ||||||||||||| ||   | |||||||| |||||||||| ||||| | ||||||    
T  27297574 ttttcacatttcttaagaaaaactgttagtgtaattaatgtgtctgttttgtgtgttaatattacaaaattatcctttgt 27297653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 44424592 - 44424671
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||||||||||||| ||   | |||||| | |||||||||| ||||||| ||||||    
T  44424592 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttgtatgttaatattacgaaattgtcctttgt 44424671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 25731602 - 25731671
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||||||||||| | || |||||||||||||||||  |||||||||||||||||  || ||||| ||||||    
T  25731602 atttcttaagaaga-ttgttagtgtaattaaagtatctattttgtgtattaataaaactaaatttttcttt 25731671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 284
Target Start/End: Complemental strand, 4398620 - 4398560
Alignment:
Q  224 ttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||| || ||||||||||||| ||   |||||||||| |||||||||| |||||||    
T  4398620 ttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattacgaaattgt 4398560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 28265059 - 28264987
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||  ||||||||||||||||||    
T  28265059 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgcgttaatattaccaaattgt 28264987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 37355033 - 37355105
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || || |||||||||| ||   | |||||||| |||||||||| |||||||    
T  37355033 ttttcacatttcttaagaaaagttgtttgtgtaattaatgtgtctcttttgtgtgttaatattacaaaattgt 37355105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 43650038 - 43650110
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||| ||||||||| | ||||||||||| ||   | |||||| | |||||||||| ||||||||||||||    
T  43650038 atttctttagaaaaattgtcagtgtaattaatgtgtctgttttgtatgttaatattactaaattgttctttgt 43650110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 26201076 - 26200997
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||||||||||||| ||||||||| |||||  ||   |||||||||||||||||||| |||||| ||||||||    
T  26201076 ttttcatatttcttaagaaaagttattagtgcaattattgtgtctattttgtgtattaatattatcaaattattctttgt 26200997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 48193612 - 48193691
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||| |||||||||||| ||||||||||||| ||   |||||||||| |||||||||||||||| | ||||||    
T  48193612 ttttcacattttttaagaaaaattgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgt 48193691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 284
Target Start/End: Complemental strand, 6376273 - 6376169
Alignment:
Q  182 tactccatccgtccctatatgtaattttactttt--catatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaa 279  Q
    |||||| |||||||||||||||||    ||||||  || ||||||||||||||||| ||||||||||||| ||   | |||||||| |||||||||| ||    
T  6376273 tactccctccgtccctatatgtaagcccacttttttcacatttcttaagaaaaattgttagtgtaattaatgtctctgttttgtgtgttaatattactaa 6376174  T
Q  280 attgt 284  Q
    |||||    
T  6376173 attgt 6376169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 10685082 - 10685161
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||||||||||||| |||| ||||||||||| ||   | |||| ||| |||||||||| ||||||| ||||||    
T  10685082 ttttcatatttcttaagaaaagttatcagtgtaattaatgtgtctgttttatgtgttaatattacgaaattgtcctttgt 10685161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 31373806 - 31373727
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||||||||| |||| | |||||| ||   |||||||||| |||||||||| ||||||| ||||||    
T  31373806 ttttcacatttcttaagaaaaattgttagggcaattaatgtgtctattttgtgtgttaatattactaaattgtcctttgt 31373727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 40211385 - 40211313
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||||| |||||||||||| || |||||||||| ||   | |||||||| |||||||||| |||||||    
T  40211385 ttttcatattttttaagaaaaattgtttgtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgt 40211313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 46783949 - 46783877
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| ||||||||| |||||| ||   ||| || ||| ||||||||||||||||||    
T  46783949 ttttcacatttcttaagaaaagttattagtgaaattaatgtgtctatcttatgtgttaatattaccaaattgt 46783877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 20123447 - 20123526
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| ||||||||| |||||||| ||||||    
T  20123447 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattatcaaattgtcctttgt 20123526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 37048032 - 37048111
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| |||| ||||||||||| ||   | |||||||| ||||| || ||||||||| ||||||    
T  37048032 ttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaatgttcccaaattgtcctttgt 37048111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 40740947 - 40741017
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    |||||| |||||||||||||| || ||| |||||||||  |   |||||||||| ||||||||||||||||    
T  40740947 ttttcacatttcttaagaaaagttgttaatgtaattaatatgtctattttgtgtgttaatattaccaaatt 40741017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 11388117 - 11388189
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||||||||||||||||| ||||||||||||| ||   ||||||| || ||||||||||||||||||    
T  11388117 ttttcacatttcttaagaaaaattgttagtgtaattaatgtgtctattttgcgtgttaatattaccaaattgt 11388189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 14645999 - 14645920
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||| ||||||||| || ||||||||||||| ||   |||||||||| ||||||||||||||||||| |||||    
T  14645999 ttttcacattttttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattgttatttgt 14645920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 27638187 - 27638108
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| |||||||||||||||| ||   |||||||||| |||||||||  ||||||| ||||||    
T  27638187 ttttcacatttcttaagaaaagttattagtgtaattaatgtctctattttgtgtgttaatattataaaattgtcctttgt 27638108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 11344554 - 11344631
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||||| |||||||||||||| ||||| |||||||||| ||   |||||||||| |||| ||||||||||| ||||||    
T  11344554 ttttcacatttcttaagaaaagttattggtgtaattaatgtgtctattttgtgtgttaacattaccaaattattcttt 11344631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 29676849 - 29676777
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||||||||||||| | ||||||||||| ||   |||||| ||| |||||||||| |||||||    
T  29676849 ttttcatatttcttaagaaaaattgtcagtgtaattaatgtgtctattttatgtgttaatattacgaaattgt 29676777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 831470 - 831391
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||||||||||||| || | | ||||||||| || ||| | ||| || |||||||||||||||||| ||||||    
T  831470 ttttcatatttcttaagaaaagttgtcaatgtaattaatgtgcatgtattgcgtgttaatattaccaaattgtcctttgt 831391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 22659583 - 22659646
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    |||||||||||||| || ||||| ||||||| |||  |||||||||| ||||||||||||||||    
T  22659583 atttcttaagaaaagttgttagtataattaatgtatttattttgtgtgttaatattaccaaatt 22659646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 42010864 - 42010943
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||| ||||||||| ||   |||||||||| ||||||||| |||||| ||||||||    
T  42010864 ttttcacatttcttaagaaaatttgttaatgtaattaatgtgtctattttgtgtgttaatattatcaaattattctttgt 42010943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 46048518 - 46048597
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | ||||||||||||||||||| ||||||| ||||||    
T  46048518 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcctttgt 46048597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 46435840 - 46435761
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||||||||||| ||||||    
T  46435840 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttgt 46435761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 52325613 - 52325534
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||||||| | ||||||||||||| ||   |||||| ||| ||||||||| |||||||| ||||||    
T  52325613 ttttcacatttcttaagaaaaaatgttagtgtaattaatgtgtctattttatgtgttaatattatcaaattgtcctttgt 52325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 44083635 - 44083693
Alignment:
Q  224 ttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    |||||||||||| ||| ||||||||| |||  |||||||||| ||||||||||||||||    
T  44083635 ttaagaaaaattgttattgtaattaatgtatctattttgtgtgttaatattaccaaatt 44083693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 33412071 - 33412010
Alignment:
Q  224 ttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgtt 285  Q
    |||||||||||| |||||| |||||| ||   |||||||||| |||||||||||||||||||    
T  33412071 ttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgtt 33412010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 20945410 - 20945331
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||||||||||||| ||   |||||| ||| ||||||||||| |||| | ||||||    
T  20945410 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttatgtgttaatattacctaattatcctttgt 20945331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 41740083 - 41740004
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||| |||||||||||||||| |  |||||| ||   |||||||||| |||||||||||||||| | ||||||    
T  41740083 ttttcacattttttaagaaaaattattaatacaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgt 41740004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 43187203 - 43187124
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||||||||||||| |||| || | | ||||||||| ||   | ||||||||||||||||||| ||||||| ||||||    
T  43187203 ttttcatatttcttaaaaaaagttgtcaatgtaattaatgtgtctgttttgtgtattaatattacgaaattgtcctttgt 43187124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 13084468 - 13084398
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    ||||||||||||||||||||| || | ||| ||||||| ||   | |||||||| ||||||||||||||||    
T  13084468 ttttcatatttcttaagaaaagttgtcagtataattaatgtgtctgttttgtgtgttaatattaccaaatt 13084398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 26517325 - 26517248
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||| ||| |||||||||||||||||| ||||    
T  26517325 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttctgtgttaatattaccaaattgtccttt 26517248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 12077853 - 12077781
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||| |||||||    
T  12077853 ttttcaaatttcttaagaaaagttgtcagtgtaattaatgtgtctcttttgtgtgttaatattacaaaattgt 12077781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 25750530 - 25750602
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||||||||||  || ||| |||||||||  |   |||||||||| ||||||||||||| |||||||||||    
T  25750530 atttcttaagaaaggttgttaatgtaattaatttgtctattttgtgtgttaatattaccaacttgttctttgt 25750602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 26121335 - 26121407
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||||||||||| || | ||||||||||| ||   | |||||||| ||||||||| |||||||| ||||||    
T  26121335 atttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattatcaaattgtcctttgt 26121407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 27047288 - 27047216
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| ||| ||||||||||  | |||||| |||||| ||   |||||||||| ||||||||||||||||||    
T  27047288 ttttcacattccttaagaaaagctgttagtgcaattaatgtgtctattttgtgtgttaatattaccaaattgt 27047216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 50525043 - 50525007
Alignment:
Q  255 atattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  50525043 atattttgtgtgttaatattaccaaattgtcctttgt 50525007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 3559134 - 3559055
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||||||||| || || ||||||| ||   |||||||||| |||||||||||||||||| ||||||    
T  3559134 ttttcacatttcttaagaaaaattgttggtataattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgt 3559055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 10523381 - 10523302
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||| ||||||||| |||| ||||||||||| ||   | |||||||| ||||||||||||||||||| |||||    
T  10523381 ttttcatattttttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgttttttgt 10523302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 289
Target Start/End: Original strand, 129624 - 129684
Alignment:
Q  229 aaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttcttt 289  Q
    |||| |||| ||||||||||| ||   ||||||||||||||||||||||||||||||||||    
T  129624 aaaagttatcagtgtaattaatgtgtctattttgtgtattaatattaccaaattgttcttt 129684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 7510603 - 7510670
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaa 279  Q
    |||||| |||| ||||||||| |||||||||||||||| ||  || |||||||| |||||||||||||    
T  7510603 ttttcacattttttaagaaaagttattagtgtaattaatgtgtatgttttgtgtgttaatattaccaa 7510670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 18729585 - 18729648
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatatta 275  Q
    |||||| |||||||||||||||||||| |||||||||| ||   |||||||||| |||||||||    
T  18729585 ttttcacatttcttaagaaaaattatttgtgtaattaatgtgtctattttgtgtgttaatatta 18729648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 35569112 - 35569033
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| |||| ||||||||||| ||   | |||| |||||||||||||| ||||| ||||||||    
T  35569112 ttttcacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttatgtattaatattactaaattattctttgt 35569033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 36177296 - 36177361
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||| |||| ||||||||||| ||   |||||||||| |||||||||| |||||||    
T  36177296 atttcttaagaaaagttatcagtgtaattaatgtgtctattttgtgtgttaatattacaaaattgt 36177361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 5845173 - 5845245
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||||||||   || | ||||||||||| |||  | |||||||||||||||||| ||||||||    
T  5845173 ttttcatatttcttaagaattgttgtcagtgtaattaatgtatttgttttgtgtattaatattatcaaattgt 5845245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 20946084 - 20946156
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||||||||||||||  || |||||| |||||| ||   |||||||||| ||||||||| ||||||||    
T  20946084 ttttcatatttcttaagaaacgttgttagtgcaattaacgtgtctattttgtgtgttaatattatcaaattgt 20946156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 4738627 - 4738698
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattg 283  Q
    |||||| ||||||||||||| ||| | ||||||||||| |||  | |||||||| |||||||||| ||||||    
T  4738627 ttttcacatttcttaagaaatattgtcagtgtaattaatgtatttgttttgtgtgttaatattactaaattg 4738698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 21574987 - 21574908
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||  || |||||||| |||| ||   |||||||| | |||||||||||||||||| ||||||    
T  21574987 ttttcacatttcttaagaaatgtttttagtgtacttaatgtgtctattttgtatgttaatattaccaaattgtcctttgt 21574908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 36347708 - 36347637
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattg 283  Q
    |||||| ||||||||| |||| || | ||||||||||| |||  | |||||||||||||||||| |||||||    
T  36347708 ttttcagatttcttaataaaagttgtcagtgtaattaatgtatctgttttgtgtattaatattatcaaattg 36347637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 39690593 - 39690514
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||||| |||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  39690593 ttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgt 39690514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 32067832 - 32067897
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||||||||||  |||||| |||| | ||   |||||||||| ||||||||||||||||||    
T  32067832 atttcttaagaaaaatagttagtgcaattcatgtgtctattttgtgtgttaatattaccaaattgt 32067897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 9375730 - 9375674
Alignment:
Q  228 gaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||||||||| ||||||  ||  ||||||||||  |||||||||||||||||    
T  9375730 gaaaaattattagtgcaattaatatatttattttgtgtgctaatattaccaaattgt 9375674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 11980713 - 11980777
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattac 276  Q
    ||||||||||| |||| |||| || ||||||||||||| ||   |||||||||| ||||||||||    
T  11980713 ttttcatattttttaataaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattac 11980777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 13723585 - 13723506
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||| |||||| ||   ||||||||||||||||||||||||||| | ||||||    
T  13723585 ttttcacatttcttaagaaaagttgttagtgcaattaatgtgtctattttgtgtattaatattaccaaattatcctttgt 13723506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 38680471 - 38680543
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||||||||||| ||   |||||||||| ||||||||| ||||||||    
T  38680471 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattatcaaattgt 38680543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 4813569 - 4813490
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || ||| || |||||| ||   |||||||||| |||||||||||||||| ||||||||    
T  4813569 ttttcacatttcttaagaaaagttgttaatgcaattaatgtgtctattttgtgtgttaatattaccaaattattctttgt 4813490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 30336055 - 30336134
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |  |||||||||| ||   |||||||||| |||||||||||||||||| ||||||    
T  30336055 ttttcacatttcttaagaaaagttgtcggtgtaattaatgtgtctattttgtgtgttaatattaccaaattgtcctttgt 30336134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 32152154 - 32152233
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || || ||| |||||| ||   |||||||||| ||||||||||||||||||| |||||    
T  32152154 ttttcacatttcttaagaaaagttgttggtgcaattaatgtgtctattttgtgtgttaatattaccaaattgttatttgt 32152233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 41737130 - 41737193
Alignment:
Q  221 ttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||| || |||||||||||||| |   |||||||||| ||||||||||||||||||    
T  41737130 ttcttaagaaaagttgttagtgtaattaaaatgtctattttgtgtgttaatattaccaaattgt 41737193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 2342900 - 2342972
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||| |||||||||||| ||||| || |||| ||   |||||||||| ||||||||||||||||||    
T  2342900 ttttcacattttttaagaaaaattgttagtttacttaatgtgtctattttgtgtgttaatattaccaaattgt 2342972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 35366091 - 35366019
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||||||||||||  |||| || ||||||||| ||| |||  |||||||||| ||||||||| ||||||||    
T  35366091 ttttcatatttcttactaaaagttgttagtgtaagtaatgtatctattttgtgtgttaatattatcaaattgt 35366019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 15512888 - 15512809
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||||| |||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  15512888 ttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgt 15512809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 271
Target Start/End: Complemental strand, 23393619 - 23393560
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaat 271  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||  ||||||||||||||||    
T  23393619 ttttcatattttttaagaaaagttgttaatgtaattaatgtatctattttgtgtattaat 23393560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 25258326 - 25258405
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||||||| ||||||||| || |||||| |||||| ||   |||||| ||| || ||||||||||||||| ||||||    
T  25258326 ttttcatattttttaagaaaagttgttagtgcaattaatgtgtctattttatgtcttgatattaccaaattgtcctttgt 25258405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 28723753 - 28723690
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    |||| ||||||||| || ||||||||||||| ||   |||||||||| ||||||||||||||||    
T  28723753 attttttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaatt 28723690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 28949071 - 28948992
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || |||||||| |||| ||   |||||| ||| |||||||||| ||||||| ||||||    
T  28949071 ttttcacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaatattactaaattgtcctttgt 28948992  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 30898670 - 30898591
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||||||||| | ||||||||||| ||   | |||| ||| |||||||||||||||| | ||||||    
T  30898670 ttttcacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttatgtgttaatattaccaaattatcctttgt 30898591  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 275
Target Start/End: Original strand, 36084966 - 36085029
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatatta 275  Q
    |||||| |||| |||||||||||||| ||||||||||| |||  | |||||||| |||||||||    
T  36084966 ttttcacattttttaagaaaaattatcagtgtaattaatgtatctgttttgtgtgttaatatta 36085029  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 44335285 - 44335364
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||| |||| || | ||||||||||| ||   | |||||||| |||||||||||||||||| ||||||    
T  44335285 ttttcacatttcttaataaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattaccaaattgtcctttgt 44335364  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 15911652 - 15911590
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaat 281  Q
    |||||||||||||| || |||||||| |||| ||   |||||||||| |||||||||||||||    
T  15911652 atttcttaagaaaagttgttagtgtacttaatgtgtctattttgtgtgttaatattaccaaat 15911590  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 282
Target Start/End: Complemental strand, 31808079 - 31808009
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaatt 282  Q
    |||||| | ||||| |||||| || ||||||||||||| ||   |||||||||| ||||||||||||||||    
T  31808079 ttttcacacttcttgagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaatt 31808009  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 44652965 - 44652889
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||   | ||||||||||||| ||   | |||||||| |||||||||||| ||||||||||||    
T  44652965 ttttcacatttcttaagaaa---tgttagtgtaattaatgtgtctgttttgtgttttaatattaccacattgttctttgt 44652889  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 47754742 - 47754677
Alignment:
Q  219 atttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||| ||||||| |||||| |||||| ||   |||||| ||| ||||||||||||||||||    
T  47754742 atttcttaaaaaaaattgttagtgcaattaatgtgtctattttttgtgttaatattaccaaattgt 47754677  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 249
Target Start/End: Complemental strand, 52141284 - 52141247
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaa 249  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  52141284 ttttcacattttttaagaaaaattattagtgtaattaa 52141247  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 8877768 - 8877840
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    ||||||||||| |||||||||||| | ||| ||||||| ||   | |||||||| |||||||||| |||||||    
T  8877768 ttttcatattttttaagaaaaattgtcagtataattaatgtgtttgttttgtgtgttaatattacgaaattgt 8877840  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Complemental strand, 8984768 - 8984696
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||| ||||| |||||| ||||||||||||| ||   | |||||||| |||||||||| |||||||    
T  8984768 ttttcacattttttaaggaaaattgttagtgtaattaatgtgtctgttttgtgtgttaatattactaaattgt 8984696  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 16582529 - 16582601
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||| |||||||    
T  16582529 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaatattacgaaattgt 16582601  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 32047438 - 32047510
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || | ||||||||||| ||   | |||||||| |||||||||| |||||||    
T  32047438 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaatattacgaaattgt 32047510  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 291
Target Start/End: Original strand, 47643538 - 47643615
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| |||||||||||||| || | ||||||||||| ||  || |||||||  |||||||||| ||||||| ||||||    
T  47643538 ttttcacatttcttaagaaaagttgtcagtgtaattaatgtgtatgttttgtg--ttaatattactaaattgtcctttgt 47643615  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 291
Target Start/End: Original strand, 50692404 - 50692484
Alignment:
Q  211 cttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    ||||||| |||||||||||||| || | | || |||||| ||   |||||||||| ||| |||||||||||||| ||||||    
T  50692404 cttttcacatttcttaagaaaagttgtcaatgcaattaatgtgtctattttgtgtgttagtattaccaaattgtcctttgt 50692484  T

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Target: scaffold1091 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1091
Description:

Target: scaffold1091; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 291
Target Start/End: Complemental strand, 2021 - 1942
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgttctttgt 291  Q
    |||||| ||||||||||| || || ||||||||||||| ||   |||||||||| |||||||||||||||| | ||||||    
T  2021 ttttcacatttcttaagataagttgttagtgtaattaatgtgtctattttgtgtgttaatattaccaaattatcctttgt 1942  T

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Target: scaffold0005 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 214615 - 214687
Alignment:
Q  212 ttttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattaccaaattgt 284  Q
    |||||| |||||||||||||| || ||||||||||||| ||   || ||| ||| ||||||||||||||||||    
T  214615 ttttcacatttcttaagaaaagttgttagtgtaattaatgtgtctagtttttgtgttaatattaccaaattgt 214687  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 38584 - 38519
Alignment:
Q  213 tttcatatttcttaagaaaaattattagtgtaattaaagtacatattttgtgtattaatattacca 278  Q
    ||||| ||||||||| ||||||| ||||| ||||||| ||   |||||||||| ||||||||||||    
T  38584 tttcacatttcttaataaaaattgttagtataattaatgtgtctattttgtgtgttaatattacca 38519  T

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