View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1433_low_42 (Length: 290)
Name: NF1433_low_42
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 42158720 - 42158992
Alignment:
| Q |
16 |
caaacagtaattagccgttggacattgagcaacaaccaaccatggtttgacaaaccacctgtcgcagtaagtcagaccactaatttctaagaaatctatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158720 |
caaacagtaattagccgttggacattgaccaacaaccaaccatggtttgacaaaccacctatcgtagtaagtcagaccactaatttctaagaaatctatg |
42158819 |
T |
|
| Q |
116 |
tggtttgacgaaccaaagtatatatggtccgtccaaccactagttggttgttcgatataaaatccaaatctaaagataaagagacaaacctgtcttgtct |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158820 |
tggtttgacgaaccacagtatatatggtccgttcaaccactagttggttgtttgatataaaatccaaatctaaagataaagagacaaacctgtcttgtct |
42158919 |
T |
|
| Q |
216 |
gtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatccaacaagatcttc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42158920 |
gtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatccaacaagatcttc |
42158992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 283
Target Start/End: Original strand, 42146585 - 42146692
Alignment:
| Q |
176 |
aatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatc |
275 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
42146585 |
aatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagttttctgagaaacttctcattgtcttcttcgacaatcttaaggatgctatc |
42146684 |
T |
|
| Q |
276 |
caacaaga |
283 |
Q |
| |
|
|||||||| |
|
|
| T |
42146685 |
caacaaga |
42146692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 200 - 283
Target Start/End: Original strand, 42179878 - 42179961
Alignment:
| Q |
200 |
caaacctgtcttgtctgtctctaagtttcctaagaaacttctcattgtcttcttcaacaatcttgaggatactatccaacaaga |
283 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
42179878 |
caaacctgtcttgtctgtctctaagttttcttagaaacttctcattgtcttcttcaacaatcttaaggatgctatccaacaaga |
42179961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University