View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_43 (Length: 290)
Name: NF1433_low_43
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 20685214 - 20685471
Alignment:
| Q |
19 |
aaaatgactgtatttatctaaagagttaatcatcttgcactttttcattcacatagtaacataatatgattacacacttcaaatcaggactggtatattt |
118 |
Q |
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| T |
20685214 |
aaaatgactgtttttatctaaagagttaatcatcttgcactttttcattcacgtagtaacataatatgattacacgcttcaaatcaggactggtatattt |
20685313 |
T |
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| Q |
119 |
ataaattataacttattgtgctgtctgaggtaatttgcaatgtttttgaattgaaattaaaatgtaactaccaatgatcaggtggttggtgtaacccatg |
218 |
Q |
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| T |
20685314 |
ctaaattataacttattatgctgtctgaggtaatttgcaatgtttttgaattgaaattaaaatgtaactaccaatgatcaggtggtggttgtaacccatg |
20685413 |
T |
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| Q |
219 |
cttatggaaaatgctctggggttagatacatgacgggtggtttgaaagtgtactatgt |
276 |
Q |
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| T |
20685414 |
cttatggaaaatgctctggggttagacacatgacggatggtttgaaagtgtaccatgt |
20685471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 276
Target Start/End: Complemental strand, 40672585 - 40672505
Alignment:
| Q |
196 |
tcaggtggttggtgtaacccatgcttatggaaaatgctctggggttagatacatgacgggtggtttgaaagtgtactatgt |
276 |
Q |
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| T |
40672585 |
tcaggtggtggttgcaactcatgcttatggaaatcgatctggggtcagatatatgactggtggtctgaaagtatactatgt |
40672505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 34 - 276
Target Start/End: Original strand, 35684401 - 35684637
Alignment:
| Q |
34 |
atctaaagagttaatcatcttgcactttttcattcacatagtaacataatatgattacacac--ttcaaatcaggactggtatatttataaattataact |
131 |
Q |
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| T |
35684401 |
atctaaagaattaatcattttacactttttccttcacgtagtaacataatatgattacacacacttcaaatcaggactgatatatttataa-------ct |
35684493 |
T |
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| Q |
132 |
tattgtgctgtctgaggtaatttgcaatgtttttgaattgaaattaaaatgtaactaccaatgatcaggtggttggtgtaacccatgcttatggaaaatg |
231 |
Q |
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| T |
35684494 |
tattgtgctgtctgaggtaatttgggaagtttttgaattgaa-ttaaaatgtaactaccaatgatcaggtggtggttgtaactcatgcttatggaaaacg |
35684592 |
T |
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| Q |
232 |
ctctggggttagatacatgacgggtggtttgaaagtgtactatgt |
276 |
Q |
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| T |
35684593 |
ctctggggttagatacatgacaggtggtttaaaagtctactatgt |
35684637 |
T |
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