View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_50 (Length: 277)

Name: NF1433_low_50
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_50
NF1433_low_50
[»] chr5 (8 HSPs)
chr5 (16-267)||(10046129-10046380)
chr5 (22-267)||(39676079-39676324)
chr5 (22-267)||(10866515-10866760)
chr5 (22-267)||(10873545-10873790)
chr5 (22-267)||(10878616-10878861)
chr5 (22-267)||(10883687-10883932)
chr5 (22-267)||(10887605-10887850)
chr5 (166-251)||(37948119-37948204)
[»] chr8 (1 HSPs)
chr8 (166-257)||(30709594-30709685)


Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 10046129 - 10046380
Alignment:
Q  16 ctactttccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcgg 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10046129 ctactttccatggaagatgacgaggttgtccgtgcggtggtaaccggtacaattccgtcatactcgcttgaatcaaaactcggagattgcaaacgtgcgg 10046228  T
Q  116 cggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046229 cggcgatacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttg 10046328  T
Q  216 tgagatgccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10046329 tgagatgccgataggatttgttcagattccggtgggagttgccggacctttg 10046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 39676079 - 39676324
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    |||||||||||||| ||||||||  |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| || | ||    
T  39676079 tccatggaagatgaggaggttgttggtgcagtggtgtctggatcaattccatcttactcgcttgaatcgaagcttggagattgccgacgtgctgctgtga 39676178  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| |||||||||||||| |||| ||||||    |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||    
T  39676179 ttaggaaccaagctgtggagagagttactggaaggtcacttgaaggtttaccaatggaaggttttgattatgattctatattaggacaatgttgcgagat 39676278  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  39676279 gccaatagggtttgttcagattccggtgggtgttgccggtcctttg 39676324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 10866515 - 10866760
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10866515 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10866614  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||||||||||||||||||||||| ||||||    |||||||| |||||||||||||| ||  |||| ||||||||||||||||| |||||    
T  10866615 ttaggaaccaagcggtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgactacaattctatattaggacagtgttgcgagat 10866714  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||||||||| |||||||||||||||||||| |||||||| ||||||    
T  10866715 gccgatagggtttgttcagattccggtgggtgttgccggtcctttg 10866760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10873790 - 10873545
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10873790 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10873691  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| ||||||||||||||||||| ||||||    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  10873690 ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagat 10873591  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  10873590 gcccatagggtttgttcagattccggtgggtgttgccggtcctttg 10873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10878861 - 10878616
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10878861 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10878762  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| ||||||||||||||||||| ||||||    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  10878761 ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagat 10878662  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  10878661 gcccatagggtttgttcagattccggtgggtgttgccggtcctttg 10878616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10883932 - 10883687
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||  | ||  ||||||| || |||||||||||||| || || |||||||||  |||||| ||    |    
T  10883932 tccatggaagacgaggaggttgtcagtgcagtggtgtcaggatcaattccatcttactcgcttgaatccaagcttggagattgccgacgtgcagcaaata 10883833  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| ||||||||||||||||||| ||||||    |||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||    
T  10883832 ttaggaaccaagccgtggagagagttaccggaaggtcacttgaaggtttaccgatggaaggttttgattacgattctatattaggacagtgttgcgagat 10883733  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||| ||||| |||||||||||||||||||| |||||||| ||||||    
T  10883732 gcccatagggtttgttcagattccggtgggtgttgccggtcctttg 10883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 22 - 267
Target Start/End: Complemental strand, 10887850 - 10887605
Alignment:
Q  22 tccatggaagatgacgaggttgtccgtgcggttgtaaccggtacaattccttcatactcgcttgaatcaaaactcggagattgcaaacgtgcggcggcga 121  Q
    ||||||||||| || ||||||||| |||| || ||| | ||  |||||||||| ||||| ||||| || || ||||||||||||   ||||| ||   ||    
T  10887850 tccatggaagacgaagaggttgtcggtgcagtggtatcgggatcaattccttcttactcccttgagtcgaagctcggagattgccgtcgtgcagcaaaga 10887751  T
Q  122 tacgtaaccaagcggtggagagagttaccggaaagtcactctcgggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagat 221  Q
    |  | |||||||| |||||||| |||||||||| ||||||    |||||||| ||| |||||||||| || ||||| ||||||||||||||||| |||||    
T  10887750 ttaggaaccaagcagtggagagggttaccggaaggtcacttgaaggtttaccgatgaaaggttttgactacgattctatattaggacagtgttgcgagat 10887651  T
Q  222 gccgataggatttgttcagattccggtgggagttgccggacctttg 267  Q
    ||||||||| |||||||| ||||||||||| |||||||| ||||||    
T  10887650 gccgatagggtttgttcaaattccggtgggtgttgccggtcctttg 10887605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 37948119 - 37948204
Alignment:
Q  166 ggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtggg 251  Q
    ||||||||| | ||||| |||||||| ||  |||| ||||| ||||||||||| |||||| |||| | | |||| |||||||||||    
T  37948119 ggtttaccattagaaggatttgattacgaagcgattttagggcagtgttgtgaaatgccggtagggtatattcaaattccggtggg 37948204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 30709685 - 30709594
Alignment:
Q  166 ggtttaccaatggaaggttttgattatgattcgatattaggacagtgttgtgagatgccgataggatttgttcagattccggtgggagttgc 257  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| || |||||    
T  30709685 ggtttaccgttggaaggttttgattacgattcgatattgggacagtgttgtgagatgccgatagggtttgttcaaattccggttggtgttgc 30709594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University