View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1433_low_52 (Length: 271)
Name: NF1433_low_52
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_52 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 6265960 - 6266203
Alignment:
| Q |
19 |
ctctccaactcagaggaacatatgcagaatattctcacttagaataaaaaattgtactaaaatgataattgtaatcagtcaatttaaaagacgcattgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6265960 |
ctctccaactcagaggaacatatgcagaatattctctcttagaataaaaaattgtactaaaatgataattgtaatcagtcaatttaaaagacgtattgtt |
6266059 |
T |
|
| Q |
119 |
cctctttttcagatcttatattgaccgtttatattttgtttgtttaagggttgtttatactcttctctaatccttttggtaatggtaattttattaagca |
218 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6266060 |
cccctttttcggatcttatattgaccgtttatattttgtttgtttaatggttgtttatactcttctctaatccttttggtaatggtaattttattaagca |
6266159 |
T |
|
| Q |
219 |
actggaaccaatttaaagtttctagagttcgacttaacctttgc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6266160 |
actggaaccaatttaaagtttctagagttcgacttaacctttgc |
6266203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University