View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_56 (Length: 257)

Name: NF1433_low_56
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_56
NF1433_low_56
[»] chr4 (3 HSPs)
chr4 (1-90)||(46407869-46407958)
chr4 (183-247)||(46408049-46408113)
chr4 (88-150)||(46407986-46408048)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 46407869 - 46407958
Alignment:
Q  1 ttaaaggggtaatattaatttaaaaagatttttgtttgaatgaaatatattcttatttactggaatttataattttctatcaagaagaaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46407869 ttaaaggggtaatattaatttaaaaagatttttgtttgaatgaaatatattcttatttactggaatttataattttctatcaagaagaaa 46407958  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 46408049 - 46408113
Alignment:
Q  183 aagtgagaagatctacataaccaatatcttagattttatatgaaattgtggtgccaaattctgtg 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46408049 aagtgagaagatctacataaccaatatcttagattttatatgaaattgtggtgccaaattctgtg 46408113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 46407986 - 46408048
Alignment:
Q  88 aaaactacattctcctatcaaaagtgttaggtgtgtgagatgaagatagaagagaagttaaaa 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46407986 aaaactacattctcctatcaaaagtgttaggtgtgtgagatgaagatagaagagaagttaaaa 46408048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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