View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_6 (Length: 587)

Name: NF1433_low_6
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_6
NF1433_low_6
[»] chr8 (21 HSPs)
chr8 (25-205)||(2617696-2617876)
chr8 (292-363)||(2617963-2618034)
chr8 (75-189)||(41260693-41260806)
chr8 (77-176)||(18050036-18050134)
chr8 (75-189)||(15255854-15255967)
chr8 (75-148)||(599533-599606)
chr8 (64-189)||(34799515-34799639)
chr8 (356-436)||(2617783-2617863)
chr8 (81-173)||(28876910-28877002)
chr8 (75-189)||(5730818-5730931)
chr8 (75-189)||(16578109-16578222)
chr8 (73-121)||(28254925-28254973)
chr8 (75-182)||(599937-600043)
chr8 (75-174)||(34799080-34799178)
chr8 (75-182)||(41260272-41260378)
chr8 (64-198)||(9930078-9930212)
chr8 (75-189)||(16578528-16578641)
chr8 (77-174)||(18428209-18428305)
chr8 (399-467)||(2208721-2208789)
chr8 (399-467)||(28876910-28876978)
chr8 (77-189)||(28877321-28877432)
[»] chr3 (37 HSPs)
chr3 (466-587)||(13227595-13227716)
chr3 (492-587)||(53883866-53883967)
chr3 (76-182)||(36701534-36701640)
chr3 (77-189)||(44676904-44677015)
chr3 (75-174)||(36701107-36701206)
chr3 (362-467)||(36701530-36701635)
chr3 (77-189)||(2323382-2323493)
chr3 (77-189)||(49951549-49951660)
chr3 (77-148)||(27199705-27199776)
chr3 (75-182)||(43222391-43222497)
chr3 (75-182)||(49951985-49952091)
chr3 (75-189)||(50662844-50662957)
chr3 (75-189)||(51827958-51828071)
chr3 (98-192)||(40490697-40490793)
chr3 (75-174)||(16701239-16701337)
chr3 (75-182)||(27200130-27200236)
chr3 (75-174)||(37076121-37076219)
chr3 (75-182)||(39010076-39010182)
chr3 (75-182)||(43678296-43678402)
chr3 (75-182)||(49720800-49720906)
chr3 (64-121)||(14654688-14654745)
chr3 (390-467)||(27199709-27199786)
chr3 (362-467)||(27200126-27200230)
chr3 (75-148)||(49407797-49407870)
chr3 (356-464)||(40489487-40489594)
chr3 (78-189)||(329850-329960)
chr3 (75-182)||(46013423-46013529)
chr3 (75-177)||(38535310-38535411)
chr3 (75-177)||(44676473-44676574)
chr3 (398-467)||(49407803-49407872)
chr3 (359-467)||(49408212-49408320)
chr3 (77-189)||(16689361-16689472)
chr3 (76-144)||(30513724-30513792)
chr3 (399-467)||(33412625-33412693)
chr3 (399-467)||(49720378-49720446)
chr3 (359-467)||(50900959-50901066)
chr3 (399-467)||(51473327-51473395)
[»] chr4 (46 HSPs)
chr4 (466-586)||(42679927-42680047)
chr4 (73-198)||(23986519-23986644)
chr4 (356-464)||(23986530-23986638)
chr4 (77-182)||(40160529-40160633)
chr4 (359-467)||(24336194-24336302)
chr4 (75-189)||(28465513-28465626)
chr4 (112-198)||(31297111-31297197)
chr4 (75-189)||(56077756-56077869)
chr4 (292-437)||(31297053-31297198)
chr4 (77-173)||(229606-229702)
chr4 (77-189)||(14439831-14439942)
chr4 (70-174)||(51309951-51310055)
chr4 (69-172)||(37336596-37336699)
chr4 (75-189)||(34789383-34789496)
chr4 (321-421)||(12930857-12930957)
chr4 (77-182)||(33777635-33777739)
chr4 (76-177)||(51641273-51641374)
chr4 (76-189)||(54441001-54441113)
chr4 (399-467)||(10795782-10795850)
chr4 (75-182)||(12593025-12593131)
chr4 (62-121)||(19528857-19528916)
chr4 (75-182)||(46737094-46737200)
chr4 (75-189)||(12593455-12593568)
chr4 (75-189)||(40160095-40160208)
chr4 (374-464)||(51309951-51310041)
chr4 (75-148)||(21034709-21034782)
chr4 (75-148)||(24335762-24335835)
chr4 (77-173)||(229164-229260)
chr4 (359-467)||(24335768-24335876)
chr4 (399-467)||(30597990-30598058)
chr4 (359-467)||(40160101-40160208)
chr4 (75-174)||(21034236-21034334)
chr4 (62-173)||(33689817-33689927)
chr4 (77-188)||(51640963-51641074)
chr4 (76-189)||(54440573-54440683)
chr4 (76-174)||(24851913-24852010)
chr4 (76-182)||(28465083-28465188)
chr4 (76-174)||(34789830-34789927)
chr4 (77-174)||(26974692-26974788)
chr4 (75-148)||(34807117-34807190)
chr4 (362-467)||(40160525-40160629)
chr4 (359-455)||(17503993-17504088)
chr4 (133-173)||(18965199-18965239)
chr4 (77-189)||(28166007-28166118)
chr4 (75-175)||(35193748-35193847)
chr4 (76-120)||(35644062-35644106)
[»] chr1 (44 HSPs)
chr1 (294-467)||(52235034-52235207)
chr1 (124-188)||(50419440-50419504)
chr1 (75-182)||(44802609-44802716)
chr1 (329-425)||(39843202-39843298)
chr1 (76-195)||(50926232-50926352)
chr1 (75-182)||(1837506-1837612)
chr1 (76-182)||(2867913-2868018)
chr1 (75-189)||(16298683-16298796)
chr1 (132-198)||(52233796-52233862)
chr1 (75-188)||(39843457-39843569)
chr1 (75-188)||(50926674-50926786)
chr1 (75-192)||(52235096-52235213)
chr1 (77-189)||(45048567-45048678)
chr1 (360-467)||(50926674-50926780)
chr1 (61-174)||(4080008-4080120)
chr1 (60-121)||(29438916-29438977)
chr1 (359-463)||(9833583-9833687)
chr1 (130-198)||(39843209-39843277)
chr1 (65-189)||(44954658-44954781)
chr1 (75-182)||(50419698-50419805)
chr1 (76-174)||(10278550-10278647)
chr1 (67-189)||(21938556-21938677)
chr1 (337-467)||(39843434-39843563)
chr1 (75-148)||(23340184-23340257)
chr1 (77-174)||(37421163-37421259)
chr1 (294-334)||(9843555-9843595)
chr1 (77-189)||(39485068-39485179)
chr1 (359-467)||(39485072-39485179)
chr1 (359-467)||(45048567-45048674)
chr1 (356-416)||(52233796-52233856)
chr1 (102-189)||(9833583-9833670)
chr1 (75-174)||(17088147-17088245)
chr1 (75-189)||(443983-444096)
chr1 (75-177)||(9992599-9992700)
chr1 (78-148)||(25274760-25274830)
chr1 (398-464)||(25274766-25274832)
chr1 (124-182)||(29020930-29020988)
chr1 (76-174)||(44291303-44291401)
chr1 (366-464)||(50419698-50419796)
chr1 (75-148)||(29021337-29021410)
chr1 (129-189)||(9992210-9992269)
chr1 (399-467)||(23340190-23340258)
chr1 (399-467)||(23526665-23526733)
chr1 (363-467)||(44802606-44802710)
[»] scaffold0002 (1 HSPs)
scaffold0002 (491-587)||(191833-191929)
[»] chr5 (29 HSPs)
chr5 (294-416)||(12220569-12220691)
chr5 (73-189)||(10721785-10721900)
chr5 (75-182)||(16752583-16752689)
chr5 (75-189)||(28494845-28494958)
chr5 (359-467)||(41834490-41834598)
chr5 (359-467)||(10721793-10721900)
chr5 (132-192)||(12220631-12220691)
chr5 (73-121)||(32697725-32697773)
chr5 (98-189)||(13557016-13557106)
chr5 (130-177)||(25974148-25974195)
chr5 (75-189)||(28289685-28289798)
chr5 (75-189)||(28290076-28290189)
chr5 (77-189)||(20266346-20266458)
chr5 (75-171)||(22651760-22651856)
chr5 (399-467)||(22651782-22651850)
chr5 (329-437)||(25973875-25973983)
chr5 (75-182)||(15029748-15029854)
chr5 (76-119)||(16753071-16753114)
chr5 (112-187)||(25973876-25973951)
chr5 (75-174)||(41834506-41834604)
chr5 (75-189)||(18149734-18149847)
chr5 (399-464)||(20266386-20266451)
chr5 (399-467)||(4966823-4966891)
chr5 (61-189)||(8419053-8419179)
chr5 (77-121)||(14340909-14340953)
chr5 (133-189)||(17260385-17260441)
chr5 (66-182)||(27307053-27307168)
chr5 (399-467)||(28289691-28289759)
chr5 (359-415)||(28494903-28494958)
[»] chr2 (37 HSPs)
chr2 (293-425)||(5035912-5036044)
chr2 (71-189)||(33920609-33920726)
chr2 (77-198)||(3822924-3823045)
chr2 (77-198)||(3824130-3824251)
chr2 (75-174)||(14942292-14942391)
chr2 (87-189)||(2190506-2190609)
chr2 (66-189)||(31797209-31797331)
chr2 (66-189)||(38008383-38008505)
chr2 (359-464)||(2190506-2190612)
chr2 (75-189)||(4355756-4355869)
chr2 (75-189)||(20128169-20128282)
chr2 (75-173)||(28143476-28143574)
chr2 (65-174)||(20127727-20127835)
chr2 (359-464)||(28143461-28143565)
chr2 (359-467)||(31797209-31797316)
chr2 (356-463)||(3824136-3824243)
chr2 (75-182)||(4356195-4356301)
chr2 (292-467)||(20440395-20440569)
chr2 (75-189)||(62958-63071)
chr2 (333-467)||(3822928-3823062)
chr2 (67-148)||(9330267-9330348)
chr2 (77-189)||(43160012-43160124)
chr2 (77-189)||(4808882-4808993)
chr2 (66-182)||(5560043-5560158)
chr2 (399-467)||(14942317-14942385)
chr2 (57-121)||(32418142-32418206)
chr2 (66-189)||(4809311-4809433)
chr2 (75-174)||(38007951-38008049)
chr2 (75-121)||(6949943-6949989)
chr2 (75-121)||(25336099-25336145)
chr2 (75-189)||(44219645-44219758)
chr2 (77-182)||(20495196-20495301)
chr2 (293-342)||(35779840-35779889)
chr2 (66-119)||(42192744-42192797)
chr2 (70-174)||(11539633-11539736)
chr2 (78-174)||(16175797-16175892)
chr2 (22-62)||(34465745-34465784)
[»] chr7 (35 HSPs)
chr7 (61-189)||(7732919-7733046)
chr7 (88-199)||(5445144-5445255)
chr7 (88-199)||(5454188-5454299)
chr7 (75-189)||(7732489-7732602)
chr7 (72-189)||(28687931-28688046)
chr7 (359-467)||(9393743-9393850)
chr7 (75-174)||(9181859-9181957)
chr7 (77-189)||(25637630-25637741)
chr7 (75-171)||(39136687-39136783)
chr7 (75-182)||(16917714-16917820)
chr7 (75-189)||(16081731-16081844)
chr7 (75-121)||(24929807-24929853)
chr7 (359-461)||(33880633-33880735)
chr7 (357-467)||(39136693-39136802)
chr7 (76-189)||(9181534-9181646)
chr7 (77-174)||(26026320-26026416)
chr7 (77-182)||(35578902-35579006)
chr7 (74-182)||(35579324-35579431)
chr7 (399-467)||(39137004-39137072)
chr7 (73-121)||(39388767-39388815)
chr7 (68-191)||(49064028-49064150)
chr7 (356-418)||(5445186-5445248)
chr7 (356-418)||(5454230-5454292)
chr7 (75-189)||(15712366-15712479)
chr7 (75-121)||(27245204-27245250)
chr7 (69-174)||(786777-786881)
chr7 (77-182)||(5745642-5745746)
chr7 (75-148)||(5746113-5746185)
chr7 (76-189)||(9393738-9393850)
chr7 (294-415)||(18535249-18535370)
chr7 (77-121)||(5184431-5184475)
chr7 (359-467)||(9394162-9394268)
chr7 (77-109)||(11973913-11973945)
chr7 (399-467)||(35161273-35161341)
chr7 (359-467)||(35578906-35579013)
[»] chr6 (15 HSPs)
chr6 (65-182)||(31574164-31574280)
chr6 (75-189)||(5120901-5121014)
chr6 (75-189)||(31073574-31073687)
chr6 (359-467)||(35163191-35163298)
chr6 (75-189)||(32836428-32836541)
chr6 (64-189)||(5114458-5114582)
chr6 (77-189)||(35163187-35163298)
chr6 (75-121)||(28636293-28636339)
chr6 (75-189)||(33096038-33096156)
chr6 (77-173)||(25468852-25468947)
chr6 (359-415)||(33095773-33095829)
chr6 (74-121)||(30250721-30250768)
chr6 (329-467)||(24822860-24822997)
chr6 (398-467)||(32836014-32836083)
chr6 (133-189)||(33095773-33095829)
[»] scaffold1432 (2 HSPs)
scaffold1432 (360-467)||(498-604)
scaffold1432 (75-188)||(498-610)
[»] scaffold0057 (2 HSPs)
scaffold0057 (348-466)||(61036-61154)
scaffold0057 (132-192)||(61086-61146)
[»] scaffold0007 (1 HSPs)
scaffold0007 (359-467)||(205799-205906)
[»] scaffold0108 (2 HSPs)
scaffold0108 (70-148)||(15109-15187)
scaffold0108 (75-173)||(15545-15643)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 2617696 - 2617876
Alignment:
Q  25 acaatagatctcccaactcaataagggatttgcaatataataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  2617696 acaatagatctcccaactcaataagggatttgcaatataataaaataaatgtttaattacattttttgtccttgcattttgaccggttcacgaaattaat 2617795  T
Q  125 catgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacctccattcaataac 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2617796 catgtctttttcaaattgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacctccattcaataac 2617876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 2617963 - 2618034
Alignment:
Q  292 ccaagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttagga 363  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2617963 ccaagttggcactgccacataggtggtcttttgccatatcagcgattttgggagggaaaatgatggttagga 2618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 41260806 - 41260693
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||| | |||||||||||||||||||| ||  |||||||||| |||||  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  41260806 gcttaattatacttttggtcattgcattttgatcaactcacgaaattgatcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 41260708  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  41260707 gcagttttagtccta 41260693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 176
Target Start/End: Complemental strand, 18050134 - 18050036
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||  ||||  || ||| |||||||||||| | |||| || ||||| |||||||||||    
T  18050134 ttaattacatttttggtccttgcattttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgttttttgc 18050036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 15255854 - 15255967
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  15255854 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 15255952  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  15255953 gcagttttagtccta 15255967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 599533 - 599606
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||  ||||  || ||| ||||||||||||    
T  599533 gcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaa 599606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 189
Target Start/End: Complemental strand, 34799639 - 34799515
Alignment:
Q  64 ataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatacta 163  Q
    |||||||| | ||||||||||| |||||||| || ||||||||||| || ||||||||  || |  || ||| |||||||||||| | |||| || ||||    
T  34799639 ataaaatataggcttaattacacttttggtcctttcattttgaccaattaacgaaattggtcctacctcttttaaatcgaacaaaattgtccctaaacta 34799540  T
Q  164 tcatgttttttgcaattttcgtccta 189  Q
    | |||||||||||| |||| ||||||    
T  34799539 t-atgttttttgcagttttagtccta 34799515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 436
Target Start/End: Complemental strand, 2617863 - 2617783
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtga 436  Q
    ||||||||| |||||||||||||||||||||  |||  ||||  ||||||| |||||||||||||| || ||||| |||||    
T  2617863 ggttaggacgaaaattgcaaaaaacatgatagtataaggactactttgttcaatttgaaaaagacatgattaatttcgtga 2617783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 173
Target Start/End: Original strand, 28876910 - 28877002
Alignment:
Q  81 ttacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    ||||| |||||||| | ||||||||| ||| |||||||| ||||  || || |||||||||||||||| | |||| || ||||||||||||||    
T  28876910 ttacacttttggtcctcgcattttgatcagctcacgaaaataattctgcctctttcaaatcgaacaaaatcgtccctaaactatcatgttttt 28877002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 5730818 - 5730931
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| || || | ||||||| ||||| |||||| | ||||||| ||||| |||||||||    
T  5730818 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatagtcctatcttttttaaatcaaacaaaatcgtccttaaactat-atgtttttt 5730916  T
Q  175 gcaattttcgtccta 189  Q
    ||  |||| ||||||    
T  5730917 gctgttttagtccta 5730931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 16578109 - 16578222
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||  ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || | ||| |||||||||    
T  16578109 gcttaattacatttttggttcttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaattat-atgtttttt 16578207  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  16578208 gcagttttggtccta 16578222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 28254973 - 28254925
Alignment:
Q  73 atgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  28254973 atgcttaattacacttttggtccttgcattttgaccaactcacgaaatt 28254925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 600043 - 599937
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  | |||||| |  |||| ||||||| |||| ||||||| | ||||||| ||||| |||||||||    
T  600043 gcttaattacacttttggtcctaccattttgaccaactaacgaaaatggtcatatcttttttaaatggaacaaaatcgtccttaaactat-atgtttttt 599945  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  599944 gcagtttt 599937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 34799080 - 34799178
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||||||||  |||||||||||  ||| |||| |  || | | ||||| |||||||||||||| ||||||| ||||| |||||||||    
T  34799080 gcttaattacacttttggtcataccattttgaccaactcatgaaaatggtcctattttttttaaatcgaacaaagtcgtccttaaactat-atgtttttt 34799178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 41260272 - 41260378
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  ||| |||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  41260272 gcttaattacacttttggtcctaccattttgaccaactcatgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 41260370  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  41260371 gcagtttt 41260378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 64 - 198
Target Start/End: Complemental strand, 9930212 - 9930078
Alignment:
Q  64 ataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatacta 163  Q
    |||||||||| ||||||||||| |||||||| | | |||||| ||   |||||||| |  || || | |||| |||| ||||||| | ||||||  ||||    
T  9930212 ataaaataaaggcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcctgcccttttaaaatagaacaaaatggtccttcaacta 9930113  T
Q  164 tcatgttttttgcaattttcgtcctaacctccatt 198  Q
    |||| ||| ||||| ||||||||||| || |||||    
T  9930112 tcatttttgttgcatttttcgtcctaccccccatt 9930078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 16578641 - 16578528
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  ||||||||| |  |||||||| |  | || |||||||||||||||||||| |  || ||| ||||| |||||||||    
T  16578641 gcttaattacacttttggtcctaccattttgacgaactcacgaaaatggttatatctttttcaaatcgaacaaaatcatcattaaactat-atgtttttt 16578543  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  16578542 gcagttttagtccta 16578528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 18428305 - 18428209
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  18428305 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 18428209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 2208789 - 2208721
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||||||| ||||| | || |||||| ||| ||||||   ||||||||||||||||    
T  2208789 ttttgttcgatttaaaaaagataggacaattttcgtgagttggtcaaaatggtaggatcaaaagtgtaa 2208721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 28876978 - 28876910
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||||||| || ||| | || || |||||||||  |||||| |||||| |||||||||||    
T  28876978 ttttgttcgatttgaaagaggcagaattattttcgtgagctgatcaaaatgcgaggaccaaaagtgtaa 28876910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 28877432 - 28877321
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| | ||||||||||||  |||||||| |  | ||  || |||||||| ||||||| | |||| || |||||||||||||||||    
T  28877432 ttaattacacttttggtcctcgcattttgaccaactcacgaaaatggttatacctctttcaaattgaacaaaattgtcccta-actatcatgttttttgc 28877334  T
Q  177 aattttcgtccta 189  Q
      |||| ||||||    
T  28877333 tgttttagtccta 28877321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 3e-62; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 466 - 587
Target Start/End: Original strand, 13227595 - 13227716
Alignment:
Q  466 aagacgcgtaagcggatcgaataaaaaagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaa 565  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13227595 aagacgcgtaagcggatcgaataaaaaagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaa 13227694  T
Q  566 cgtccgggtcgaaatatggctt 587  Q
    ||||||||||||||||||||||    
T  13227695 cgtccgggtcgaaatatggctt 13227716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 492 - 587
Target Start/End: Complemental strand, 53883967 - 53883866
Alignment:
Q  492 aagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgt------tggttattaggcgcatcccgaaaacgtccgggtcgaaatatggc 585  Q
    ||||||| ||||||||||||||||||  || |||||||||| ||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  53883967 aagttccggttgaaataggatccacattagaaaaagcacttaccattcgtattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggc 53883868  T
Q  586 tt 587  Q
    ||    
T  53883867 tt 53883866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 36701640 - 36701534
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||||||| | ||||||||||||| |||||||| |  |||||||| |||||||||||||||| |  ||| || ||||||||||||||||    
T  36701640 cttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcatgtctctttcaaatcgaacaaaatcatccctaaactatcatgttttttg 36701541  T
Q  176 caatttt 182  Q
    || ||||    
T  36701540 cagtttt 36701534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 44677015 - 44676904
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| |  |||||||||||  |||||||| |  |||| ||||||| |||||||||||| | ||||||| ||||| |||||||||||    
T  44677015 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcatatcttttttaaatcgaacaaaatcgtccttaaactat-atgttttttgc 44676917  T
Q  177 aattttcgtccta 189  Q
    |||||| ||||||    
T  44676916 aattttagtccta 44676904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 36701107 - 36701206
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| | ||||||||| ||  |||||||| | |||||| || |||||||||||||||| | |||| || |||||||||||||||    
T  36701107 gcttaattacacttttggtcctcgcattttgatcaactcacgaaaatgatcatgcctctttcaaatcgaacaaaatcgtccataaactatcatgtttttt 36701206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 36701530 - 36701635
Alignment:
Q  362 gactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaa 461  Q
    |||||||| ||||||||||||||||   ||| ||   ||||||||||||||||| ||||| ||| | || |||||||||| |||||| |||||| |||||    
T  36701530 gactaaaactgcaaaaaacatgatagtttagggatgattttgttcgatttgaaagagacatgaccattttcgtgagctggtcaaaatgcgaggaccaaaa 36701629  T
Q  462 gtgtaa 467  Q
    ||||||    
T  36701630 gtgtaa 36701635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 2323382 - 2323493
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||||||||||| ||| | |||||||||||||||||| ||| | ||  || || ||||||||||||||||    ||| || |||||||||||||||||    
T  2323382 ttaattacattttttgtcctcgcattttgaccagttcacaaaaattatactgcctctttcaaatcgaacaaaaccatcc-taaactatcatgttttttgc 2323480  T
Q  177 aattttcgtccta 189  Q
    |||||| ||||||    
T  2323481 aattttagtccta 2323493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 49951549 - 49951660
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||||    
T  49951549 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgttttttgc 49951647  T
Q  177 aattttcgtccta 189  Q
    |||||| ||||||    
T  49951648 aattttagtccta 49951660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 27199705 - 27199776
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    |||||||||||||||||| | ||||||||||||| |||||||| |  ||||| || ||||||||||||||||    
T  27199705 ttaattacatttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaa 27199776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 43222391 - 43222497
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||| |||||||||||  |||||||||||  |||||||| || | |||||| ||| |||||||||||| | |||| || ||||| |||||||||    
T  43222391 gcttaattacgtttttggtcatcacattttgaccaactcacgaaaatagttatgtctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 43222489  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  43222490 gcattttt 43222497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 49952091 - 49951985
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | ||| ||| |||| ||||||||||    
T  49952091 gcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcttacctcttttaaatcgaacaaaatcgtcattaaacta-catgtttttt 49951993  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  49951992 gcagtttt 49951985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 50662957 - 50662844
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||| | |||||||| |  ||||||||| |  |||||||| || |||| ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  50662957 gcttaattatacttttggtcctaccattttgacaaactcacgaaaatagtcatatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 50662859  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  50662858 gcagttttagtccta 50662844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 51827958 - 51828071
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  51827958 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctagctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 51828056  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  51828057 gcatttttagtccta 51828071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 192
Target Start/End: Complemental strand, 40490793 - 40490697
Alignment:
Q  98 gcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatc--atgttttttgcaattttcgtcctaacc 192  Q
    |||||||||||| ||||||||||| |||||   ||||| ||||||||||||| ||||  || ||||||  || |||||||||||||| |||||||||    
T  40490793 gcattttgaccaattcacgaaattgatcatacattttttaaatcgaacaaagcagtctctaaactatcatattttttttgcaatttttgtcctaacc 40490697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 16701337 - 16701239
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||| |  |||||||||||  |||||||| |  |||| ||||||| || ||||||||| | ||||||| ||||| |||||||||    
T  16701337 gcttaattacatttttggtcctaccattttgaccaactcacgaaaatggtcatatcttttttaattcgaacaaaatcgtccttaaactat-atgtttttt 16701239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 27200236 - 27200130
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||| |  |  || || |||||||||||||||    |||| || |||||||||||||||    
T  27200236 gcttaattacacttttggtccttgcattttgaccagctcacgaaaatggttctgcctctttcaaatcgaacaataccgtcc-taaactatcatgtttttt 27200138  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  27200137 gcagtttt 27200130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 37076219 - 37076121
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||| | ||||||||| ||| |||||||| |  ||  | || |||||||||||||||| | |||| || |||||||||||||||    
T  37076219 gcttaattacatttttggtcctcgcattttgatcagctcacgaaaatggtcccgcctctttcaaatcgaacaaaatcgtcc-taaactatcatgtttttt 37076121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 39010076 - 39010182
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||| ||||||||||||||  |||| |||||  ||||  || ||| |||||||||||| | || |||| ||| | |||||||||    
T  39010076 gcttaattacatttttggtccttgcattttgaccaactcacaaaattgctcatacctcttttaaatcgaacaaaattgttcttaaactgt-atgtttttt 39010174  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  39010175 gcagtttt 39010182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 43678296 - 43678402
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||  |  |||| ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  43678296 gcttaattacacttttggtcctaccattttgaccaactcacgaacatggtcatatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 43678394  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  43678395 gcagtttt 43678402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 49720906 - 49720800
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |   ||||||||||  |||||||| |  |||| ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  49720906 gcttaattacacttttggtcctactattttgaccaactcacgaaaatggtcatatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 49720808  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  49720807 gcagtttt 49720800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 14654745 - 14654688
Alignment:
Q  64 ataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||| ||| ||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  14654745 ataaaagaaaggcttaattacacttttggtccttgcattttgaccaactcacgaaatt 14654688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 390 - 467
Target Start/End: Complemental strand, 27199786 - 27199709
Alignment:
Q  390 tagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||| |||||||||||||||||| || || ||| | || |||||||||| |||||| |||||| ||||| |||||    
T  27199786 tagtgacggttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaaatgtaa 27199709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 27200126 - 27200230
Alignment:
Q  362 gactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaa 461  Q
    |||||||| ||||||||||||||||   ||| ||| || ||||||||||||||| || ||| || | || |||||||||| |||||| | |||| |||||    
T  27200126 gactaaaactgcaaaaaacatgatagtttag-gacggtattgttcgatttgaaagaggcagaaccattttcgtgagctggtcaaaatgcaaggaccaaaa 27200224  T
Q  462 gtgtaa 467  Q
    ||||||    
T  27200225 gtgtaa 27200230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 49407797 - 49407870
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||||||| |||||||| | ||||||||||||| |||||||| |  ||||| || |||||||| |||||||    
T  49407797 gcttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaaatagaacaaa 49407870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 464
Target Start/End: Complemental strand, 40489594 - 40489487
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgagga 455  Q
    ||||||||||||||||| ||||| ||||| | | ||| ||||| ||||||  ||||||||||| |||||  ||||  ||||| |||  ||||| ||||||    
T  40489594 ggttaggactaaaattgaaaaaaccatgagaga-tagggactgctttgtttaatttgaaaaaggcaggatcaattttgtgagttggttaaaatacgagga 40489496  T
Q  456 tcaaaagtg 464  Q
    |||||||||    
T  40489495 tcaaaagtg 40489487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 329850 - 329960
Alignment:
Q  78 taattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgca 177  Q
    |||||||| |||||||  || |||||||||||  |||||||| |  || |  |||||| |||||||||||| | ||||||| ||||| ||||||||||||    
T  329850 taattacacttttggttcttccattttgaccaactcacgaaaatggtcctaacttttttaaatcgaacaaaatcgtccttaaactat-atgttttttgca 329948  T
Q  178 attttcgtccta 189  Q
     |||| ||||||    
T  329949 gttttagtccta 329960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 46013423 - 46013529
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||| || ||||||||||||||  ||||||||||  ||||  || ||| |||||||||||| | |||| || | ||| |||||||||    
T  46013423 gcttaattacacttttgatccttgcattttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaagtat-atgtttttt 46013521  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  46013522 gcagtttt 46013529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 38535310 - 38535411
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  ||| |||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  38535310 gcttaattacacttttggtcctaccattttgaccaactcaggaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 38535408  T
Q  175 gca 177  Q
    |||    
T  38535409 gca 38535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 44676473 - 44676574
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |||||||||||| |  ||| |||||| |||||  || ||| ||||||||||||   |||| || ||||| |||||||||    
T  44676473 gcttaattacacttttggtccttgcattttgacaaactcatgaaattgatcatacctcttttaaatcgaacaaaaccgtccctaaactat-atgtttttt 44676571  T
Q  175 gca 177  Q
    |||    
T  44676572 gca 44676574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 49407872 - 49407803
Alignment:
Q  398 gttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||| |||||||| || || ||| | || |||||||||| |||||| |||||| |||||||||||    
T  49407872 gttttgttctatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaagtgtaa 49407803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 49408212 - 49408320
Alignment:
Q  359 taggactaaaattgcaaaaaa-catgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatc 457  Q
    ||||||||||| ||||||||| |||||||   ||| ||| |||||||||||||||||| |||||  || | || |||||| ||| |||||| |||| | |    
T  49408212 taggactaaaactgcaaaaaaacatgatagtttag-gacagttttgttcgatttgaaagagacacaaccattttcgtgagatggtcaaaatgcgagtacc 49408310  T
Q  458 aaaagtgtaa 467  Q
    ||||||||||    
T  49408311 aaaagtgtaa 49408320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 16689361 - 16689472
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| | ||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || | ||| |||||||||||    
T  16689361 ttaattacagttttggtcctagcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccataaaatat-atgttttttgc 16689459  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  16689460 agttttagtccta 16689472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 30513724 - 30513792
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaa 144  Q
    ||||||||||||||||||| |||||||||||| |  |||||||| |  || | ||||||| ||||||||    
T  30513724 cttaattacatttttggtccttgcattttgacaaactcacgaaaatggtcctatcttttttaaatcgaa 30513792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 33412625 - 33412693
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    |||||||||||| |||| |||||| || | || |||||||||  |||||| |||||| |||||||||||    
T  33412625 ttttgttcgattcgaaagagacagaaccattttcgtgagctgatcaaaatgcgaggaccaaaagtgtaa 33412693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 49720446 - 49720378
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| ||  ||||| |||| |||||| ||| |||||| | ||||||||||||||||    
T  49720446 ttttgttcgatttaaaagaggtaggaccaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaa 49720378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 50900959 - 50901066
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    |||||| |||| |||||||||||| |||   ||| ||| ||||||||||||||| || || |||| | | ||  ||||||||| |||||| |||||| ||    
T  50900959 taggacaaaaactgcaaaaaacat-atagtttagggacggttttgttcgatttgtaagaggcagggccatttttgtgagctggtcaaaatgcgaggacca 50901057  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  50901058 aaagtgtaa 50901066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 51473327 - 51473395
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||||||| ||||| | || |||||| ||| ||||||   ||||||||||||||||    
T  51473327 ttttgttcgatttaaaaaagataggaccattttcgtgagttggtcaaaatggtaggatcaaaagtgtaa 51473395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 466 - 586
Target Start/End: Original strand, 42679927 - 42680047
Alignment:
Q  466 aagacgcgtaagcggatcgaataaaaaagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaa 565  Q
    |||||||||||||||||||| | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42679927 aagacgcgtaagcggatcgactcatcaagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcataccgaaaa 42680026  T
Q  566 cgtccgggtcgaaatatggct 586  Q
    ||||| |||||||||||||||    
T  42680027 cgtccaggtcgaaatatggct 42680047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 23986519 - 23986644
Alignment:
Q  73 atgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttt 172  Q
    |||||||||| || |||||||| |  |||||||||||| |||||||| |  |||||||| ||||||||||||||||   |||| || |||||||||||||    
T  23986519 atgcttaatttcacttttggtcctcacattttgaccagctcacgaaaatggtcatgtctctttcaaatcgaacaaaactgtccctaaactatcatgtttt 23986618  T
Q  173 ttgcaattttcgtcctaacctccatt 198  Q
    ||||| |||| ||||||||| |||||    
T  23986619 ttgcagttttagtcctaacccccatt 23986644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 464
Target Start/End: Complemental strand, 23986638 - 23986530
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgagga 455  Q
    |||||||||||||| ||||||||||||||||   ||| ||| |||||||||||||||||| ||||| ||| | || |||||||||| ||||||  |||||    
T  23986638 ggttaggactaaaactgcaaaaaacatgatagtttagggacagttttgttcgatttgaaagagacatgaccattttcgtgagctggtcaaaatgtgagga 23986539  T
Q  456 tcaaaagtg 464  Q
     ||||||||    
T  23986538 ccaaaagtg 23986530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 40160633 - 40160529
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||||||||||||||| ||||||||||||||  |||||||| || ||||| || |||||||| |||||||   |||| || |||||||||||||||||    
T  40160633 ttaattacatttttggtccttgcattttgaccaactcacgaaaatagtcatgcctctttcaaattgaacaaaaccgtcc-taaactatcatgttttttgc 40160535  T
Q  177 aatttt 182  Q
    | ||||    
T  40160534 agtttt 40160529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 24336194 - 24336302
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    |||||||||||  |||||||||||||||   |||  || |||||||||||||||||| || |||||| | || |||||||| | |||||| |||||||||    
T  24336194 taggactaaaagagcaaaaaacatgataatttaggaacggttttgttcgatttgaaagaggcaggaccattttcgtgagcttgtcaaaatgcgaggatca 24336293  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  24336294 aaagtgtaa 24336302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 28465626 - 28465513
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  28465626 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 28465528  T
Q  175 gcaattttcgtccta 189  Q
    |||||||| ||||||    
T  28465527 gcaattttagtccta 28465513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 31297197 - 31297111
Alignment:
Q  112 tcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacctccatt 198  Q
    ||||||||||  ||||| |||||| |||||||||||||| | || ||| ||||| ||||||||||||||||| || |||||||||||    
T  31297197 tcacgaaattggtcatgccttttttaaatcgaacaaagttgcccctatgctatcttgttttttgcaattttcatcataacctccatt 31297111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 56077869 - 56077756
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  56077869 gcttaattacatttttggtcctaccattttgaccaactcacgaaaatggtcttatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 56077771  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  56077770 gcagttttagtccta 56077756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 437
Target Start/End: Original strand, 31297053 - 31297198
Alignment:
Q  292 ccaagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataata 391  Q
    ||||||||||| ||||||||| ||| || |||||||| |||||||||||||  || ||||||  ||||| ||  |||||||||||||||| ||||  |||    
T  31297053 ccaagttggcaatgccacataggtgttcatttgccatctcagcgtttttggagggtaaaatggaggttatgatgaaaattgcaaaaaacaagatagcata 31297152  T
Q  392 gtgactgttttgttcgatttgaaaaagacaggactaattccgtgag 437  Q
    | | |   |||||||||||| |||||| || ||| |||| ||||||    
T  31297153 ggggcaactttgttcgatttaaaaaaggcatgaccaatttcgtgag 31297198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 229702 - 229606
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    ||||||||| |||||||| | ||||||||||||| |||||||| |  || || || ||||||||| |||||| | ||||||| ||||||||||||||    
T  229702 ttaattacacttttggtcttcgcattttgaccagctcacgaaaatggtcttgcctctttcaaatcaaacaaaatcgtccttaaactatcatgttttt 229606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 14439831 - 14439942
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||  ||||  |||||| ||||  |||||| | |||| || ||||| |||||||||||    
T  14439831 ttaattacatttttggtccttgcattttgaccaactcacgaaattggtcataccttttttaaattaaacaaaatcgtccctaaactat-atgttttttgc 14439929  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  14439930 agttttagtccta 14439942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 70 - 174
Target Start/End: Complemental strand, 51310055 - 51309951
Alignment:
Q  70 taaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgt 169  Q
    |||| |||||||| || |||||||| | ||||||| ||||| |||||||| |  ||||| || ||||||||||||||||  ||||| || ||||||||||    
T  51310055 taaaggcttaattgcacttttggtcctcgcatttttaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaacagtccctaaactatcatgt 51309956  T
Q  170 ttttt 174  Q
    |||||    
T  51309955 ttttt 51309951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 37336699 - 37336596
Alignment:
Q  69 ataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatg 168  Q
    ||||||||||||||  |||||||||| | ||||||| ||||  |||||||||   | || |||||||||||||||||||||| |||| ||||||| |||     
T  37336699 ataaatgcttaattgtatttttggtcctcgcattttaaccaactcacgaaataggttatctctttttcaaatcgaacaaagttgtccatatactaccatt 37336600  T
Q  169 tttt 172  Q
    ||||    
T  37336599 tttt 37336596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 34789383 - 34789496
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  34789383 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 34789481  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  34789482 gcagttttagtccta 34789496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 321 - 421
Target Start/End: Complemental strand, 12930957 - 12930857
Alignment:
Q  321 tttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaa-catgatataatagtgactgttttgttcgatttgaaaaaga 419  Q
    ||||||| |||| |||||||||  ||||||||    |||| |||||||| ||||||||| |||||||  |||| ||||||||||||||||||||||||||    
T  12930957 tttgccaaatcaacgtttttggaggggaaaatagcagttaagactaaaactgcaaaaaaacatgataatatag-gactgttttgttcgatttgaaaaaga 12930859  T
Q  420 ca 421  Q
    ||    
T  12930858 ca 12930857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 33777635 - 33777739
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| ||||| || |  |||||||||||  |||||||| | ||||| | ||||| |||||||||||| | ||||||| ||||| |||||||||||    
T  33777635 ttaattacacttttgttcctaccattttgaccaactcacgaaaatgatcatatttttttaaaatcgaacaaaatcgtccttaaactat-atgttttttgc 33777733  T
Q  177 aatttt 182  Q
    ||||||    
T  33777734 aatttt 33777739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 177
Target Start/End: Complemental strand, 51641374 - 51641273
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||| ||| |||||||| ||| |  |||||||||| ||| || |||||| ||||| ||||||| | ||| |||||| ||||||||||||    
T  51641374 cttaattacacttttagtccttgcatttagacaaactcacgaaattgatcctgccttttttaaatcaaacaaagcaatccctatactgtcatgttttttg 51641275  T
Q  176 ca 177  Q
    ||    
T  51641274 ca 51641273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 54441113 - 54441001
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||||||| |  |||||||| ||| |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| ||||||||||    
T  54441113 cttaattacacttttggtcctaccattttgatcagctcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgttttttg 54441015  T
Q  176 caattttcgtccta 189  Q
    || |||| ||||||    
T  54441014 cagttttagtccta 54441001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 10795782 - 10795850
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||||||| ||| ||||| |||| |||||||||  |||||| || |||||||||||||||    
T  10795782 ttttgttcgatttgaaagagagaggaccaatttcgtgagctgttcaaaatgcggggatcaaaagtgtaa 10795850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 12593025 - 12593131
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  || ||||||||  |||||||| |  ||||  |||||| |||||||||||| | ||||||| ||||| |||||||||    
T  12593025 gcttaattacacttttggtcctaccagtttgaccaactcacgaaaatggtcataccttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 12593123  T
Q  175 gcaatttt 182  Q
    ||||||||    
T  12593124 gcaatttt 12593131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 19528857 - 19528916
Alignment:
Q  62 taataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||| | | ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  19528857 taataaaaaataggcttaattacacttttggtccttgcattttgaccaattcacgaaatt 19528916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 46737200 - 46737094
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  46737200 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 46737102  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  46737101 gcagtttt 46737094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 12593568 - 12593455
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||  ||||  || ||| |||||||||||| | |||  || ||||| || ||||||    
T  12593568 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtctgtaaactat-atatttttt 12593470  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  12593469 gcagttttagtccta 12593455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 40160095 - 40160208
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||||||||| ||   ||||||| ||||| |||||||| || ||||| || ||| ||||||||||||   |||| || ||||| |||||||||    
T  40160095 gcttaattacatttttgatccccgcattttaaccagctcacgaaaatagtcatgcctcttttaaatcgaacaaaaccgtccctaaactat-atgtttttt 40160193  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  40160194 gcagttttagtccta 40160208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 464
Target Start/End: Original strand, 51309951 - 51310041
Alignment:
Q  374 aaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtg 464  Q
    |||||||||||||   ||| |||||||||||||||||||||| || || ||| | || ||||||||||  ||||| |||||| ||||||||    
T  51309951 aaaaaacatgatagtttagggactgttttgttcgatttgaaagaggcatgaccattttcgtgagctggtaaaaatgcgaggaccaaaagtg 51310041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 21034782 - 21034709
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||  || | ||| ||| ||||||||||||    
T  21034782 gcttaattacaattttggtccttgcattttgaccaactcacgaaattggtcctatctcttttaaatcgaacaaa 21034709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 24335762 - 24335835
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||||||| ||| | || ||||||||||||||| |||||||| |  ||||| || ||||||||||||||||    
T  24335762 gcttaattacactttcgatccttgcattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaa 24335835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 229164 - 229260
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    ||||||||| |||||||| | | ||||||||||| || ||||| |  || || || |||||||| ||||||| | ||||||| ||||||||||||||    
T  229164 ttaattacacttttggtcctcgtattttgaccagctcgcgaaaatggtcttgcctctttcaaattgaacaaaatcgtccttaaactatcatgttttt 229260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 24335876 - 24335768
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| | ||||||||||||||    ||  || |||||||||||||||||| || || ||| | || |||||||||| |||||| | ||||||     
T  24335876 taggactaaaactccaaaaaacatgatagttcagatacggttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcaaggatcg 24335777  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  24335776 aaagtgtaa 24335768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 30597990 - 30598058
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| |||||| || ||||||||||| ||| |||||  |||||| |||||||||||    
T  30597990 ttttgttcgatttaaaagagacagaaccaattccgtgagttggtcaaaacacgaggaccaaaagtgtaa 30598058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 40160208 - 40160101
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| |||||||||||| |||   ||| ||| |||||||||||||| ||| || || ||||| || ||||||||||  ||||| || ||||||    
T  40160208 taggactaaaactgcaaaaaacat-atagtttagggacggttttgttcgatttaaaagaggcatgactattttcgtgagctggttaaaatgcggggatca 40160110  T
Q  459 aaagtgtaa 467  Q
    ||| |||||    
T  40160109 aaaatgtaa 40160101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 21034236 - 21034334
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  21034236 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 21034334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 33689817 - 33689927
Alignment:
Q  62 taataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatac 161  Q
    |||||||||  | ||||||||||| |||||||| ||||||||||||||  |||| |||||  || |  || ||| |||||||||||| | ||||||| ||    
T  33689817 taataaaatttaggcttaattacacttttggtccttgcattttgaccaactcacaaaattggtcctacctcttttaaatcgaacaaaatcgtccttaaac 33689916  T
Q  162 tatcatgttttt 173  Q
    ||| ||||||||    
T  33689917 tat-atgttttt 33689927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 188
Target Start/End: Original strand, 51640963 - 51641074
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||||||||||||||  | || ||| |||||  |||| |||||  || || |||||| |||||||||||||  ||   ||||||||||||||||||||    
T  51640963 ttaattacatttttggttttcgcttttagaccaactcacaaaattggtcctgccttttttaaatcgaacaaagcggtttatatactatcatgttttttgc 51641062  T
Q  177 aattttcgtcct 188  Q
    | |||| |||||    
T  51641063 acttttggtcct 51641074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 54440573 - 54440683
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || |||   ||||||||||    
T  54440573 cttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaact---atgttttttg 54440669  T
Q  176 caattttcgtccta 189  Q
    || |||| ||||||    
T  54440670 cagttttagtccta 54440683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 24852010 - 24851913
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||| | |||||||| ||||||||||||||  |||||||||| ||| |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  24852010 cttaattatacttttggtccttgcattttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 24851913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 28465083 - 28465188
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||| ||| || |||||||||||  | |||||||| ||| |  || ||| |||||||||||| | ||||||| ||||| ||||||||||    
T  28465083 cttaattacacttttagtccttccattttgaccaacttacgaaattgatcctacctcttttaaatcgaacaaaatcgtccttaaactat-atgttttttg 28465181  T
Q  176 caatttt 182  Q
    || ||||    
T  28465182 cagtttt 28465188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 34789927 - 34789830
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||| |||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  34789927 cttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaattgtccctaaactat-atgtttttt 34789830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 26974788 - 26974692
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||| |||||||||||  | |||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  26974788 ttaattacatttttggtccttgcattttgaataattcacgaaattggtcctacctcttttaaatcgaacaaaattgtccctaaactat-atgtttttt 26974692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 34807117 - 34807190
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||||||| |||||||| ||||||||||| ||  ||||||||||  ||||  || ||| ||||||||||||    
T  34807117 gcttaattacacttttggtccttgcattttgatcaactcacgaaattggtcatacctcttttaaatcgaacaaa 34807190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 467
Target Start/End: Original strand, 40160525 - 40160629
Alignment:
Q  362 gactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaa 461  Q
    |||||||| ||||||||||||||||   ||| ||| ||||||||| |||||||| || || ||||| || |||||| ||| |||||| | |||| |||||    
T  40160525 gactaaaactgcaaaaaacatgatagtttag-gacggttttgttcaatttgaaagaggcatgactattttcgtgagttggtcaaaatgcaaggaccaaaa 40160623  T
Q  462 gtgtaa 467  Q
     |||||    
T  40160624 atgtaa 40160629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 455
Target Start/End: Complemental strand, 17504088 - 17503993
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgagga 455  Q
    ||||||||||| ||||||||||||||||   ||| ||| ||| ||||| |||||||| || |||||| | || |||||| ||| |||||| ||||||    
T  17504088 taggactaaaactgcaaaaaacatgatagtttag-gacggttatgttccatttgaaagaggcaggaccattttcgtgagatggtcaaaatgcgagga 17503993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 18965199 - 18965239
Alignment:
Q  133 tttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    |||||||||||||||| | ||||||| ||||||||||||||    
T  18965199 tttcaaatcgaacaaaatcgtccttaaactatcatgttttt 18965239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 28166007 - 28166118
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||| |||||||||| |   ||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| || ||||||||    
T  28166007 ttaattaaatttttggtcctactattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaattgtccttaaactat-attttttttgc 28166105  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  28166106 agttttagtccta 28166118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 35193847 - 35193748
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |||||||||||  || |||||||| |  || || || ||||||||| ||||||   |||| || |||||||||||||||    
T  35193847 gcttaattacacttttggtccttgcattttgataagctcacgaaaatggtcctgcctctttcaaatctaacaaaaccgtcc-taaactatcatgtttttt 35193749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 35644106 - 35644062
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaat 120  Q
    |||||||||| |||||||| ||||||||||||||  |||||||||    
T  35644106 cttaattacacttttggtccttgcattttgaccaactcacgaaat 35644062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 294 - 467
Target Start/End: Original strand, 52235034 - 52235207
Alignment:
Q  294 aagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagt 393  Q
    ||||||||||||||||||||||| || |||||||||||| |||||||||  || ||||||| ||||||||| |||||||||| ||||||||||  ||||     
T  52235034 aagttggcactgccacataagtgttcctttgccatatcaacgtttttggagggtaaaatgagggttaggaccaaaattgcaagaaacatgatagtatagg 52235133  T
Q  394 gactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||| || |||||||||||||| | |||||  | || |||||| |||  |||||  |||||||||||||||||    
T  52235134 gactgcttcgttcgatttgaaaagggcaggatcagtttcgtgagttggttaaaatctgaggatcaaaagtgtaa 52235207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 50419440 - 50419504
Alignment:
Q  124 tcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcct 188  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| |||||    
T  50419440 tcatgtctttttcaaatcgaacaaagtagtccttgtactatcatgttttttacacttttggtcct 50419504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 44802716 - 44802609
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||| |  ||||| || |||||||  ||||||| | |||| || |||||||||||||||    
T  44802716 gcttaattacacttttggtccttgcattttgaccagctcacgaaagtggtcatgcctctttcaaacggaacaaaatcgtccctaaactatcatgtttttt 44802617  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  44802616 gcagtttt 44802609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 39843298 - 39843202
Alignment:
Q  329 atcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggac 425  Q
    |||||||||||||| ||  ||||||  ||| ||||| |||| ||||||||||||||||  |||| ||| ||||||||||||||||||||| ||||||    
T  39843298 atcagcgtttttggcagctaaaatgggggtaaggaccaaaagtgcaaaaaacatgatagtatagggaccgttttgttcgatttgaaaaaggcaggac 39843202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 50926232 - 50926352
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatca-tgtttttt 174  Q
    |||||||||| |||||||| |  |||||||||||| |||||||| |||||||  || |||||||||||||||| | |||| || ||||||| | ||||||    
T  50926232 cttaattacagttttggtcctcccattttgaccagctcacgaaaataatcatacctctttcaaatcgaacaaaatcgtccctaaactatcattttttttt 50926331  T
Q  175 gcaattttcgtcctaacctcc 195  Q
    ||| |||| ||||| ||||||    
T  50926332 gcagttttagtccttacctcc 50926352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 1837506 - 1837612
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||| ||  |||||||||| ||||| ||| ||| |||||||||||| | |||| || ||||| |||||||||    
T  1837506 gcttaattacacttttggtccttgcattttgatcaactcacgaaattgatcatatctcttttaaatcgaacaaaattgtccctaaactat-atgtttttt 1837604  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  1837605 gcagtttt 1837612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 76 - 182
Target Start/End: Original strand, 2867913 - 2868018
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||||||||| ||||||||||||  |||||||| | ||||| ||| ||| |||||||||||| | ||| ||| ||||| ||||||||||    
T  2867913 cttaattacaattttggtcatcgcattttgaccaactcacgaaaatgatcatatctcttttaaatcgaacaaaattgtcgttaaactat-atgttttttg 2868011  T
Q  176 caatttt 182  Q
    || ||||    
T  2868012 cagtttt 2868018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 16298683 - 16298796
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||| | ||||||||||||||  ||||||||||  ||||  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  16298683 gcttaattacatttttggcccttgcattttgaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 16298781  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  16298782 gcagttttagtccta 16298796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 52233796 - 52233862
Alignment:
Q  132 ttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacctccatt 198  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||    
T  52233796 ttttcaagtcgaacaaagcagtccctatactatcatgttttttgcaattttggtcataacccccatt 52233862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 39843569 - 39843457
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||| |||||| ||| |||| | |||||| |||||  ||||||||||  || || |||||||||||||||||| ||||||| |||||||||||||||| |    
T  39843569 gctttattacactttcggtcctcgcatttagaccaactcacgaaattggtcctgcctttttcaaatcgaacaa-gtagtccatatactatcatgttttat 39843471  T
Q  175 gcaattttcgtcct 188  Q
    ||| |||| |||||    
T  39843470 gcacttttggtcct 39843457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 50926786 - 50926674
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||||| ||||||||||||| |||||||| |  ||  |||| ||||||||||||||||   |||| || |||||||| ||||||    
T  50926786 gcttaattacacttttggtcatcgcattttgaccagctcacgaaaatggtcccgtctctttcaaatcgaacaaaaccgtccctaaactatcat-tttttt 50926688  T
Q  175 gcaattttcgtcct 188  Q
    ||| |||| |||||    
T  50926687 gcagttttagtcct 50926674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 192
Target Start/End: Complemental strand, 52235213 - 52235096
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||| || |   ||||| ||||  |||||||| | ||| || | |||||||||||||| ||| ||||| ||||||||||||||| ||    
T  52235213 gcttaattacacttttgatcctcagattttaaccaactcacgaaactgatcctgcccttttcaaatcgaacgaagcagtccctatactatcatgtttctt 52235114  T
Q  175 gcaattttcgtcctaacc 192  Q
    |||||||| |||||||||    
T  52235113 gcaattttggtcctaacc 52235096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 45048678 - 45048567
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| | |||||||||||||||||||||| |  ||||  || |||| |||||||||||   |||| || |||||||||||||||||    
T  45048678 ttaattacacttttggtcctcgcattttgaccagttcacgaaaatggtcatacctctttccaatcgaacaaaaccgtcc-taaactatcatgttttttgc 45048580  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  45048579 agttttagtccta 45048567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 467
Target Start/End: Original strand, 50926674 - 50926780
Alignment:
Q  360 aggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaa 459  Q
    |||||||||| ||||||||| ||||||   ||| ||| |||||||||||||||||| |||| |||| | || |||||||||| |||||| ||| || |||    
T  50926674 aggactaaaactgcaaaaaa-atgatagtttagggacggttttgttcgatttgaaagagacgggaccattttcgtgagctggtcaaaatgcgatgaccaa 50926772  T
Q  460 aagtgtaa 467  Q
    ||||||||    
T  50926773 aagtgtaa 50926780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 61 - 174
Target Start/End: Original strand, 4080008 - 4080120
Alignment:
Q  61 ataataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttata 160  Q
    ||||||||||||| ||| ||||||| |||||||| |||||| |||||||  |||||||||| ||| |  || ||| |||||||||||| | |||| || |    
T  4080008 ataataaaataaaggctcaattacacttttggtccttgcatcttgaccaactcacgaaattgatcgtacctattttaaatcgaacaaaatcgtccctaaa 4080107  T
Q  161 ctatcatgtttttt 174  Q
    |||| |||||||||    
T  4080108 ctat-atgtttttt 4080120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 29438916 - 29438977
Alignment:
Q  60 tataataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||||| ||| ||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  29438916 tataataaaacaaaggcttaattacacttttggtccttgcattttgaccaactcacgaaatt 29438977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 463
Target Start/End: Original strand, 9833583 - 9833687
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| |||||||||||| ||||  ||| |||  ||||||||||||||||| || || ||||| || |||||| ||| |||| | | |||||||    
T  9833583 taggactaaaactgcaaaaaacataatattttagggacgattttgttcgatttgaaagaggcatgactattttcgtgagttggtcaaagtacaaggatca 9833682  T
Q  459 aaagt 463  Q
    |||||    
T  9833683 aaagt 9833687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 39843209 - 39843277
Alignment:
Q  130 ctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacctccatt 198  Q
    |||||||||||||||||||   |||| ||||||||||||||||||||| |||| ||||| ||| |||||    
T  39843209 ctttttcaaatcgaacaaaacggtccctatactatcatgttttttgcacttttggtccttacccccatt 39843277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 44954781 - 44954658
Alignment:
Q  65 taaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactat 164  Q
    ||||||||| ||||||||||| |||||||| | ||||||||||||  ||| |||| | |||||  |||||| ||||| |||||| |  ||| || |||||    
T  44954781 taaaataaaagcttaattacacttttggtcctcgcattttgaccaactcatgaaaatgatcataccttttttaaatcaaacaaaatcatccataaactat 44954682  T
Q  165 catgttttttgcaattttcgtccta 189  Q
     |||||||||||| |||| ||||||    
T  44954681 -atgttttttgcagttttagtccta 44954658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 50419805 - 50419698
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||| || |||||||||| |||||| |||||  ||||||||||  || || |||||| |||| |||||||   |||| | ||||||||||||||||    
T  50419805 gcttaattgcacttttggtcatcgcatttagaccaactcacgaaattggtcctgcctttttaaaattgaacaaaacggtccctgtactatcatgtttttt 50419706  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  50419705 gcactttt 50419698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 10278550 - 10278647
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||| |||||||| ||||||||||||||  |||||||||| ||| |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  10278550 cttaattacacttttggtccttgcattttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 10278647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 21938556 - 21938677
Alignment:
Q  67 aaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatca 166  Q
    ||||||| | ||||||||| |||||||| |  |||||||| ||  |||||||| | ||| | ||||||| |||||||||||| | |||| || ||||| |    
T  21938556 aaataaaggtttaattacacttttggtcttaccattttgatcaactcacgaaaatgatcttatcttttttaaatcgaacaaaatcgtccataaactat-a 21938654  T
Q  167 tgttttttgcaattttcgtccta 189  Q
    ||||||||||| |||| ||||||    
T  21938655 tgttttttgcagttttagtccta 21938677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 467
Target Start/End: Original strand, 39843434 - 39843563
Alignment:
Q  337 ttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtga 436  Q
    |||||||||  ||||||| ||| ||||| |||| |||| |||||||||||  |||  ||||  || |||||||||||||||| |||||| |||| |||||    
T  39843434 ttttgggagctaaaatgagggtaaggaccaaaagtgcataaaacatgatagtatatggactactt-gttcgatttgaaaaaggcaggaccaatttcgtga 39843532  T
Q  437 gctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    | ||| | |||| |||||| | |||||||||    
T  39843533 gttggtctaaatgcgaggaccgaaagtgtaa 39843563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 23340184 - 23340257
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||||||| ||||| |||||||||||||||||  ||||||||||  || | ||| ||| ||||||||||||    
T  23340184 gcttaattacacttttgatcattgcattttgaccaactcacgaaattggtcctatctcttttaaatcgaacaaa 23340257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 37421163 - 37421259
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  37421163 ttaattacacttttggtctttgcattttgaccaattcacgaaattggtcttacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 37421259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 9843595 - 9843555
Alignment:
Q  294 aagttggcactgccacataagtggtcttttgccatatcagc 334  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  9843595 aagttgacactgccacataagtgatcttttgccatatcagc 9843555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 39485068 - 39485179
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| | |||||||||| || |||||||| |  || |  || |||||||||||||||| | |||| || ||||| |||||||||||    
T  39485068 ttaattacacttttggtcctcgcattttgactagctcacgaaaatggtcctacctctttcaaatcgaacaaaatcgtccctaaactat-atgttttttgc 39485166  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  39485167 agttttagtccta 39485179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 39485179 - 39485072
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| |||||||||||| |||   ||| |||  ||||||||||||||||| ||  ||||| | || |||||||| | |||||| |||||| ||    
T  39485179 taggactaaaactgcaaaaaacat-atagtttagggacgattttgttcgatttgaaagaggtaggaccattttcgtgagctagtcaaaatgcgaggacca 39485081  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  39485080 aaagtgtaa 39485072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 45048567 - 45048674
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| ||||||||||||||||   ||| ||| ||||||||||||| |||| ||  | ||| | || ||||| |||| |||||| |||||| ||    
T  45048567 taggactaaaactgcaaaaaacatgatagtttag-gacggttttgttcgattggaaagaggtatgaccattttcgtgaactggtcaaaatgcgaggacca 45048665  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  45048666 aaagtgtaa 45048674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 416
Target Start/End: Complemental strand, 52233856 - 52233796
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaa 416  Q
    ||||| ||| |||||||||||||||||||||  |||| ||||| ||||||||| |||||||    
T  52233856 ggttatgaccaaaattgcaaaaaacatgatagtatagggactgctttgttcgacttgaaaa 52233796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 9833670 - 9833583
Alignment:
Q  102 tttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtccta 189  Q
    ||||||||  |||||||| || ||||| || |||||||||||||||| | |||| || | ||| |||||||||||| |||| ||||||    
T  9833670 tttgaccaactcacgaaaatagtcatgcctctttcaaatcgaacaaaatcgtccctaaaatattatgttttttgcagttttagtccta 9833583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 17088147 - 17088245
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| | |||||||| ||||||||||||| |||||||| |  |  || || ||||||||||||||||   |||| || |||||||||||||||    
T  17088147 gcttaattacactgttggtcatcgcattttgaccagctcacgaaaatggttttgcctctttcaaatcgaacaaaaccgtcc-taaactatcatgtttttt 17088245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 444096 - 443983
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||| | ||||| || ||||||||||||||  ||||||||||  ||||  || ||| |||||||||||| | || | || ||||| |||||||||    
T  444096 gcttaattatacttttgatctttgcattttgaccaactcacgaaatttgtcatacctcttttaaatcgaacaaaatcgttcctaaactat-atgtttttt 443998  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  443997 gcagttttagtccta 443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 9992700 - 9992599
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |||||||||||| |  ||| |||| |  || | ||||||| |||||||||||| | || |||| ||||| |||||||||    
T  9992700 gcttaattacacttttggtccttgcattttgacaaactcatgaaaatggtcctatcttttttaaatcgaacaaaatcgtgcttaaactat-atgtttttt 9992602  T
Q  175 gca 177  Q
    |||    
T  9992601 gca 9992599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 25274760 - 25274830
Alignment:
Q  78 taattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||| || |||||||| | ||||||||||||| |||||||| |  ||||| || ||||||||||||||||    
T  25274760 taattgcacttttggtcctcgcattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaa 25274830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 398 - 464
Target Start/End: Complemental strand, 25274832 - 25274766
Alignment:
Q  398 gttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtg 464  Q
    |||||||||||||||||| || || ||| | || |||||||||| |||||| |||||| ||||||||    
T  25274832 gttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgcgaggaccaaaagtg 25274766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 29020930 - 29020988
Alignment:
Q  124 tcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaatttt 182  Q
    |||||||| ||| |||||||||||| |  |||||| | |||||||||||||||||||||    
T  29020930 tcatgtctcttttaaatcgaacaaaatcatccttaaattatcatgttttttgcaatttt 29020988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 44291303 - 44291401
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||| || |||||||| |  |||||||||||| |||||||| |  | ||| || |||||||| ||||||| | |||| || |||||||||||||||    
T  44291303 cttaattgcacttttggtcctcacattttgaccagctcacgaaaatggttatgcctctttcaaattgaacaaaatcgtccataaactatcatgtttttt 44291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 366 - 464
Target Start/End: Original strand, 50419698 - 50419796
Alignment:
Q  366 aaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtg 464  Q
    |||| ||||||||||||||||  | || ||| ||||||||| |||| |||||| |||||| |||| |||||| ||| | |||| ||| || ||||||||    
T  50419698 aaaagtgcaaaaaacatgatagtacagggaccgttttgttcaattttaaaaaggcaggaccaatttcgtgagttggtctaaatgcgatgaccaaaagtg 50419796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 29021410 - 29021337
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    |||||||| || |||||||| |  |||||||||||| |||||||| |  ||||| || ||||||||||||||||    
T  29021410 gcttaattgcacttttggtcctcacattttgaccagctcacgaaaatgttcatgcctctttcaaatcgaacaaa 29021337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 9992210 - 9992269
Alignment:
Q  129 tctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtccta 189  Q
    ||||||| |||||||||||| | ||||||| ||||| |||||||||||| |||| ||||||    
T  9992210 tcttttttaaatcgaacaaaatggtccttaaactat-atgttttttgcagttttagtccta 9992269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 23340258 - 23340190
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| ||| ||||| |||| |||||| ||| |||||| | | ||||||||||||||    
T  23340258 ttttgttcgatttaaaagagataggaccaatttcgtgagttggtcaaaatgcaatgatcaaaagtgtaa 23340190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 23526733 - 23526665
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| || |||||| | || |||||||||| ||||||  ||||| |||||||||||    
T  23526733 ttttgttcgatttaaaagaggcaggaccattttcgtgagctggtcaaaatgtgaggaccaaaagtgtaa 23526665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 467
Target Start/End: Original strand, 44802606 - 44802710
Alignment:
Q  363 actaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaag 462  Q
    ||||||| ||||||||||||||||   ||| |||  ||||||||  ||||||| || || ||| | || |||||||||| |||||| | |||| ||||||    
T  44802606 actaaaactgcaaaaaacatgatagtttagggacgattttgttccgtttgaaagaggcatgaccactttcgtgagctggtcaaaatgcaaggaccaaaag 44802705  T
Q  463 tgtaa 467  Q
    |||||    
T  44802706 tgtaa 44802710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 491 - 587
Target Start/End: Original strand, 191833 - 191929
Alignment:
Q  491 aaagttcccgttgaaataggatccacacaaggaaaagcacttgccattcgttggttattaggcgcatcccgaaaacgtccgggtcgaaatatggctt 587  Q
    ||||||||  ||||||||||||| | |||||||| ||||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||    
T  191833 aaagttccgattgaaataggatctaaacaaggaagagcacttgccattcgttggttattagaagcatcccaaaagcgtccgggtcgaaatatggctt 191929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 294 - 416
Target Start/End: Original strand, 12220569 - 12220691
Alignment:
Q  294 aagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagt 393  Q
    ||||||| ||||||||||| ||| |  |||||||||||||| |||||||  || ||||||| ||||||||  |||||||||| ||||||||||  ||||     
T  12220569 aagttggtactgccacatatgtgtttctttgccatatcagcatttttggagggtaaaatgagggttaggatcaaaattgcaagaaacatgatagtatagg 12220668  T
Q  394 gactgttttgttcgatttgaaaa 416  Q
    |||||||||||||||||||||||    
T  12220669 gactgttttgttcgatttgaaaa 12220691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 10721785 - 10721900
Alignment:
Q  73 atgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttt 172  Q
    |||||||||||||||||||||| |  |||||||||||| |||||||| |  || ||||| |||||||||||||||| | |||| || |||||||||||||    
T  10721785 atgcttaattacatttttggtcctcacattttgaccagctcacgaaaatggtcttgtctctttcaaatcgaacaaaatcgtcc-taaactatcatgtttt 10721883  T
Q  173 ttgcaattttcgtccta 189  Q
    ||||| |||| ||||||    
T  10721884 ttgcagttttagtccta 10721900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 16752583 - 16752689
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||||||  |||||||||||||| |||||||| | ||||||  | |||||||||||||||| | |||| || ||||| |||||||||    
T  16752583 gcttaattacacttttggtccctgcattttgaccagctcacgaaaatgatcatgcttctttcaaatcgaacaaaatcgtccataaactat-atgtttttt 16752681  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  16752682 gcagtttt 16752689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 28494845 - 28494958
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| || |||||||||||||||| |||| |  |  || || ||||||||||||||||   |||| || |||||||||||||||    
T  28494845 gcttaattacacttttggtccttacattttgaccagttcaggaaaatggttctgcctctttcaaatcgaacaaaactgtcc-taaactatcatgtttttt 28494943  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  28494944 gcagttttagtccta 28494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 41834490 - 41834598
Alignment:
Q  359 taggactaaaattgcaaaaaa-catgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatc 457  Q
    ||||||||||| ||||||||| |||||||   ||| ||| |||||||||||| ||||| || |||||| | || |||||||||| |||||| |||||| |    
T  41834490 taggactaaaactgcaaaaaaacatgatagtttag-gacggttttgttcgatctgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggacc 41834588  T
Q  458 aaaagtgtaa 467  Q
    ||||||||||    
T  41834589 aaaagtgtaa 41834598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 10721900 - 10721793
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| ||||||||||||||||   ||| |||  ||||||||||||||||| ||||| ||| | || |||||||||| ||||||  ||||| ||    
T  10721900 taggactaaaactgcaaaaaacatgatagtttag-gacgattttgttcgatttgaaagagacaagaccattttcgtgagctggtcaaaatgtgaggacca 10721802  T
Q  459 aaagtgtaa 467  Q
    ||| |||||    
T  10721801 aaaatgtaa 10721793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 12220691 - 12220631
Alignment:
Q  132 ttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacc 192  Q
    |||||||||||||||||  ||||| ||||||||||||||| ||||||||||  ||||||||    
T  12220691 ttttcaaatcgaacaaaacagtccctatactatcatgtttcttgcaattttgatcctaacc 12220631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 32697773 - 32697725
Alignment:
Q  73 atgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  32697773 atgcttaattacacttttggtcattgcattttgaccaactcacgaaatt 32697725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 13557016 - 13557106
Alignment:
Q  98 gcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtccta 189  Q
    ||||||||||||| |||||||| |  ||||| || ||||||||| |||||| | || |||| |||||||||||||||||| |||| ||||||    
T  13557016 gcattttgaccagctcacgaaaatggtcatgcctctttcaaatcaaacaaaatcgt-cttaaactatcatgttttttgcagttttagtccta 13557106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 25974195 - 25974148
Alignment:
Q  130 ctttttcaaatcgaacaaagtagtccttatactatcatgttttttgca 177  Q
    |||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  25974195 ctttttcaaatcgaacaaagtaatccctatagtatcatgttttttgca 25974148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 28289685 - 28289798
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||| || ||||||||||||||  ||||||||||| ||||  || ||| |||||||||||| | |||| || | ||| |||||||||    
T  28289685 gcttaattacacttttgatccttgcattttgaccaactcacgaaattagtcatacctcttttaaatcgaacaaaatcgtccctaaattat-atgtttttt 28289783  T
Q  175 gcaattttcgtccta 189  Q
     || |||| ||||||    
T  28289784 ccagttttagtccta 28289798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 28290189 - 28290076
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | || |||| |||||||||||| | ||||||| ||||| |||||||||    
T  28290189 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcatttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 28290091  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  28290090 gcagttttagtccta 28290076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 20266458 - 20266346
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||| || |||||||| | | ||||||||||| | |||||| |  |||||||| |||||||||||||||| | |||| || ||||||||| || |||     
T  20266458 ttaattgcacttttggtcctcgtattttgaccagcttacgaaaatggtcatgtctctttcaaatcgaacaaaatcgtccctaaactatcatggttgttgt 20266359  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  20266358 agttttagtccta 20266346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 171
Target Start/End: Complemental strand, 22651856 - 22651760
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttt 171  Q
    ||||||||||| |||| ||| | ||||||||||||| |||||||| |  |  || ||||||||||||||||||| | |||| || ||||| ||||||    
T  22651856 gcttaattacactttttgtcctcgcattttgaccagctcacgaaaatggttctgcctttttcaaatcgaacaaaatcgtccataaactattatgttt 22651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 22651782 - 22651850
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    |||||||||||||||||||| ||| || | || |||||||||| |||||| ||||||  ||||||||||    
T  22651782 ttttgttcgatttgaaaaaggcagaaccattttcgtgagctggtcaaaatgcgaggacaaaaagtgtaa 22651850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 437
Target Start/End: Complemental strand, 25973983 - 25973875
Alignment:
Q  329 atcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaa 428  Q
    |||||| ||||||||||  ||||||| | |  |||| |||| || |||||||||||||  || | ||||||||||||||||| ||||||| || ||| ||    
T  25973983 atcagcatttttgggagttaaaatgaagttatggaccaaaagtgaaaaaaacatgatagtatggggactgttttgttcgattcgaaaaaggcatgaccaa 25973884  T
Q  429 ttccgtgag 437  Q
    || ||||||    
T  25973883 tttcgtgag 25973875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 15029854 - 15029748
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  || |  |||||| |||||||||||| | ||||||| ||||| |||||||||    
T  15029854 gcttaattacacttttggtcctcccattttgaccaactcacgaaaatggtcttaccttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 15029756  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  15029755 gcagtttt 15029748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 16753114 - 16753071
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaa 119  Q
    ||||||||||||||||||||| ||||||||||||  ||||||||    
T  16753114 cttaattacatttttggtcatcgcattttgaccaactcacgaaa 16753071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 25973876 - 25973951
Alignment:
Q  112 tcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcc 187  Q
    ||||||||||  ||||| ||||||| |||||||||||  |||||  ||||||||||||||||| || |||| ||||    
T  25973876 tcacgaaattggtcatgcctttttcgaatcgaacaaaacagtccccatactatcatgtttttttcacttttggtcc 25973951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 41834604 - 41834506
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| | ||||||||||||| |||||||| |  || || || ||||| ||||||||||   |||| || |||||||||||||||    
T  41834604 gcttaattacacttttggtcctcgcattttgaccagctcacgaaaatggtcctgcctctttcagatcgaacaaaaccgtcc-taaactatcatgtttttt 41834506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 18149734 - 18149847
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||| || |  ||||| |||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  18149734 gcttaattacacttttgatcctaccatttggaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 18149832  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  18149833 gcagttttagtccta 18149847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 464
Target Start/End: Original strand, 20266386 - 20266451
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtg 464  Q
    ||||||||||||||||| ||||| ||| | || ||| |||||| |||||| |||||| ||||||||    
T  20266386 ttttgttcgatttgaaagagacatgaccattttcgtaagctggtcaaaatacgaggaccaaaagtg 20266451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 4966891 - 4966823
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| || ||| |||| || |||||| ||| |||||| |||||| |||||||||||    
T  4966891 ttttgttcgatttaaaagaggcagtactattttcgtgagttggtcaaaatgcgaggaccaaaagtgtaa 4966823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 8419179 - 8419053
Alignment:
Q  61 ataataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttata 160  Q
    |||| |||| ||||||||||||||| |||||||| |  |||||||||||  |||||||  |  || | ||||||| |||| ||||||| | ||||||| |    
T  8419179 ataaaaaaaaaaatgcttaattacacttttggtcctaccattttgaccaactcacgaatatggtcctatcttttttaaattgaacaaaatcgtccttaaa 8419080  T
Q  161 ctatcatgttttttgcaattttcgtccta 189  Q
    |||| || ||||||||| |||| ||||||    
T  8419079 ctat-at-ttttttgcagttttagtccta 8419053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 14340953 - 14340909
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||||||||||||  ||||||||||||||  ||||||||||    
T  14340953 ttaattacatttttggtacttgcattttgaccaactcacgaaatt 14340909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 17260385 - 17260441
Alignment:
Q  133 tttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtccta 189  Q
    |||||||||||||||| | |||| || | |||||||||||||||| |||| ||||||    
T  17260385 tttcaaatcgaacaaaattgtccataaattatcatgttttttgcagttttagtccta 17260441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 27307053 - 27307168
Alignment:
Q  66 aaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatc 165  Q
    |||||||| ||||||||||| |||||||  | ||||||||||||  | | |||| |  |||||| | |||||||| ||||||| |  ||| || ||||||    
T  27307053 aaaataaaggcttaattacacttttggttctcgcattttgaccaacttatgaaaatggtcatgtttctttcaaattgaacaaaatcatcc-taaactatc 27307151  T
Q  166 atgttttttgcaatttt 182  Q
    |||||||||||| ||||    
T  27307152 atgttttttgcagtttt 27307168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Complemental strand, 28289759 - 28289691
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| ||  | |||||||| |||||| ||| |||||| | ||||||||||||||||    
T  28289759 ttttgttcgatttaaaagaggtatgactaatttcgtgagttggtcaaaatgcaaggatcaaaagtgtaa 28289691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 28494958 - 28494903
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaa 415  Q
    ||||||||||| ||||||||||||||||   ||| ||| ||||||||||||||||||    
T  28494958 taggactaaaactgcaaaaaacatgatagtttag-gacagttttgttcgatttgaaa 28494903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 425
Target Start/End: Complemental strand, 5036044 - 5035912
Alignment:
Q  293 caagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatag 392  Q
    |||||||||||||| ||||| ||| || |||||||||| |||||||||||  || ||||||| ||||| || ||||| ||||||||| ||||||   |||    
T  5036044 caagttggcactgcaacataggtgttcctttgccatataagcgtttttggagggtaaaatgagggttatgattaaaactgcaaaaaatatgatagtttag 5035945  T
Q  393 tgactgttttgttcgatttgaaaaagacaggac 425  Q
     ||| |||||||||||||| |||||||||||||    
T  5035944 ggacggttttgttcgatttaaaaaagacaggac 5035912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 189
Target Start/End: Original strand, 33920609 - 33920726
Alignment:
Q  71 aaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtt 170  Q
    ||||| |||||||||||||||||| ||||||||||||||  |||||||||| |||||  || ||| |||||||||||| | |||| || ||||| ||| |    
T  33920609 aaatggttaattacatttttggtccttgcattttgaccaactcacgaaattgatcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgat 33920707  T
Q  171 ttttgcaattttcgtccta 189  Q
    ||||||| |||| ||||||    
T  33920708 ttttgcagttttagtccta 33920726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 3822924 - 3823045
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| | ||||||| ||||  ||| |||||| ||| || | |||| ||| ||||||||| | ||| ||||||||||||||||||||    
T  3822924 ttaattacacttttggtcctcgcattttaaccaactcatgaaattgatcctgccctttttaaaccgaacaaagcactccctatactatcatgttttttgc 3823023  T
Q  177 aattttcgtcctaacctccatt 198  Q
    |||||| ||| ||||| |||||    
T  3823024 aattttggtcataacccccatt 3823045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 77 - 198
Target Start/End: Complemental strand, 3824251 - 3824130
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||| | |||||||||| ||||||| ||||  ||||||||||  ||||| | |||| ||||||||||||  ||| | ||| ||||||||||||||||    
T  3824251 ttaattatacttttggtcatcgcattttaaccaactcacgaaattggtcatgccctttttaaatcgaacaaaacagttcatatgctatcatgttttttgc 3824152  T
Q  177 aattttcgtcctaacctccatt 198  Q
    |||||| || |||||| |||||    
T  3824151 aattttagttctaacccccatt 3824130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 14942391 - 14942292
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| | ||||||||||||| |||||||| |  || ||||| |||||||||||||||| | |||| || | |||||||||||||    
T  14942391 gcttaattacacttttggtcttcgcattttgaccagctcacgaaaatggtcttgtctctttcaaatcgaacaaaattgtccataaattatcatgtttttt 14942292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 2190609 - 2190506
Alignment:
Q  87 ttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatg-ttttttgcaattttcgt 185  Q
    |||||||||| ||||||||||||| ||||||||||  || || ||||||||||||||||||| | |||| || | ||||| | ||||||||| |||| ||    
T  2190609 ttttggtcatcgcattttgaccagctcacgaaattggtcctgcctttttcaaatcgaacaaaatcgtccctaaattatcacgcttttttgcagttttagt 2190510  T
Q  186 ccta 189  Q
    ||||    
T  2190509 ccta 2190506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 31797331 - 31797209
Alignment:
Q  66 aaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatc 165  Q
    |||| ||| ||||||||||| |||||||| |  |||||||||||| |||||||| |  ||||| || ||||||||||||||||   |||| || |||||     
T  31797331 aaaaaaaaggcttaattacacttttggtcctcacattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgtccctaaactat- 31797233  T
Q  166 atgttttttgcaattttcgtccta 189  Q
    |||||||||||| |||| ||||||    
T  31797232 atgttttttgcagttttagtccta 31797209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 38008505 - 38008383
Alignment:
Q  66 aaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatc 165  Q
    |||| ||| ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| |||||     
T  38008505 aaaaaaaaggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat- 38008407  T
Q  166 atgttttttgcaattttcgtccta 189  Q
    |||||||||||| |||| ||||||    
T  38008406 atgttttttgcagttttagtccta 38008383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 2190506 - 2190612
Alignment:
Q  359 taggactaaaattgcaaaaaa-catgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatc 457  Q
    ||||||||||| ||||||||| | |||||   ||| |||  |||||||||||||||||||| |||||| |||| |||||||||| |||||| ||| || |    
T  2190506 taggactaaaactgcaaaaaagcgtgataatttagggacgattttgttcgatttgaaaaaggcaggaccaatttcgtgagctggtcaaaatgcgatgacc 2190605  T
Q  458 aaaagtg 464  Q
    |||||||    
T  2190606 aaaagtg 2190612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 4355756 - 4355869
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |||||||||||||   ||||||||||  ||||  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  4355756 gcttaattacacttttggtccttgcattttgacctactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 4355854  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  4355855 gcagttttagtccta 4355869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 20128282 - 20128169
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||| ||||  ||||||||||  || |  || ||| ||||| |||||| | ||||||| ||||| |||||||||    
T  20128282 gcttaattacacttttggtccttgcatttttaccaactcacgaaattggtcctacctcttttaaatcaaacaaaatcgtccttaaactat-atgtttttt 20128184  T
Q  175 gcaattttcgtccta 189  Q
    |||||||| ||||||    
T  20128183 gcaattttagtccta 20128169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 28143574 - 28143476
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    |||||||| || |||||||| | ||||||||||||| |||||||| |  || || || |||||||||||||||| | |||| || ||||||||||||||    
T  28143574 gcttaatttcacttttggtcctcgcattttgaccagctcacgaaaatggtcctgcctctttcaaatcgaacaaaatcgtccctaaactatcatgttttt 28143476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 20127727 - 20127835
Alignment:
Q  65 taaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactat 164  Q
    ||||| ||| ||||||||||| |||||||| |  ||||||||||| ||||||||| |  || | ||||||| |||||||||||| | ||||||| |||||    
T  20127727 taaaaaaaaggcttaattacacttttggtcctaccattttgaccaattcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat 20127826  T
Q  165 catgtttttt 174  Q
     |||||||||    
T  20127827 -atgtttttt 20127835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 359 - 464
Target Start/End: Original strand, 28143461 - 28143565
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| |||||||| |||||||   ||| |||  ||||||||||||||||| || |||||| | || |||||||||| |||||| |||||| ||    
T  28143461 taggactaaaactgcaaaaa-catgatagtttagggacgattttgttcgatttgaaagaggcaggaccattttcgtgagctggtcaaaatgcgaggacca 28143559  T
Q  459 aaagtg 464  Q
    ||||||    
T  28143560 aaagtg 28143565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 31797209 - 31797316
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| |||||||||||| |||   ||| ||| |||||||||||||||||| || || ||| | || |||||||||| ||||||  ||||| ||    
T  31797209 taggactaaaactgcaaaaaacat-atagtttagggacggttttgttcgatttgaaagaggcatgaccattttcgtgagctggtcaaaatgtgaggacca 31797307  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  31797308 aaagtgtaa 31797316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 463
Target Start/End: Original strand, 3824136 - 3824243
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgagga 455  Q
    |||||| ||||||||||||||||||||||||  |||   ||||||||||||||||| |||| | || ||| |||| |||||| |||  ||||| ||| ||    
T  3824136 ggttagaactaaaattgcaaaaaacatgatagcatatgaactgttttgttcgatttaaaaagggcatgaccaatttcgtgagttggttaaaatgcgatga 3824235  T
Q  456 tcaaaagt 463  Q
     |||||||    
T  3824236 ccaaaagt 3824243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 4356301 - 4356195
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||| | |  |||| ||||||| |||||||||||| | ||||||| ||||| |||||||||    
T  4356301 gcttaattacacttttggtcctatcattttgaccaactcacgataatggtcatatcttttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 4356203  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  4356202 gcagtttt 4356195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 467
Target Start/End: Original strand, 20440395 - 20440569
Alignment:
Q  292 ccaagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataata 391  Q
    ||||||||||||||||||||| ||  |  |||||||||||||||||||| |||||  |||||  || |||||| |||| ||||| ||| ||||||    |    
T  20440395 ccaagttggcactgccacataggtatttctttgccatatcagcgttttt-ggaggataaatgggggataggacgaaaactgcaacaaaaatgataactga 20440493  T
Q  392 gtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
     |||| |||||||||  ||| |||| | |||||| | || |||||| ||| |||||  |||||| |||||||||||    
T  20440494 atgaccgttttgttctgttttaaaagggcaggaccagtttcgtgagttggccaaaacacgaggaccaaaagtgtaa 20440569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 62958 - 63071
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| || ||||| || |||||||||||  |||||||| |  || |  |||||| |||||||||||| | ||||||| ||||| |||||||||    
T  62958 gcttaattacacttatggtccttccattttgaccaactcacgaaaatggtcctacctttttaaaatcgaacaaaatcgtccttaaactat-atgtttttt 63056  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  63057 gcagttttagtccta 63071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 467
Target Start/End: Complemental strand, 3823062 - 3822928
Alignment:
Q  333 gcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattcc 432  Q
    |||||||| | ||| ||||||  ||||| ||| |||||||||||||||||||||  |||| || || |||||||| ||| |||| | |||||  |||| |    
T  3823062 gcgtttttagaaggcaaaatgggggttatgaccaaaattgcaaaaaacatgatagtatagggagtgctttgttcggtttaaaaagggcaggatcaatttc 3822963  T
Q  433 gtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
     |||| |||  ||||| |||||| |||||||||||    
T  3822962 atgagttggttaaaatgcgaggaccaaaagtgtaa 3822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 9330348 - 9330267
Alignment:
Q  67 aaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||| | ||||||||| |||||||| ||||||||||||||  ||||||||||  ||||  || ||| ||||||||||||    
T  9330348 aaataaaagtttaattacacttttggtccttgcattttgaccaactcacgaaatttgtcatacctcttttaaatcgaacaaa 9330267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 43160012 - 43160124
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactat-catgttttttg 175  Q
    |||||||||||||||||| ||||||||||| ||  ||||||||||  ||||  || ||| |||||||||||| | |||| || ||||| ||| |||||||    
T  43160012 ttaattacatttttggtccttgcattttgatcaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccctaaactatacat-ttttttg 43160110  T
Q  176 caattttcgtccta 189  Q
    || |||| ||||||    
T  43160111 cagttttagtccta 43160124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 4808882 - 4808993
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||||||||||| ||  ||||||||||||||  |||||||||| ||| |  || ||| |||||||||||| | |||| || ||||| ||||||||||     
T  4808882 ttaattacatttttagttcttgcattttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcgtccataaactat-atgttttttgt 4808980  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  4808981 agttttagtccta 4808993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 5560043 - 5560158
Alignment:
Q  66 aaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatc 165  Q
    ||||| || ||||||||||| |||||||| |  |||||||||||  |||||||| |  |||| ||||||| |||| ||||||| | ||||||| |||||     
T  5560043 aaaattaaggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcatatcttttttaaattgaacaaaatcgtccttaaactat- 5560141  T
Q  166 atgttttttgcaatttt 182  Q
    || ||||||||| ||||    
T  5560142 atattttttgcagtttt 5560158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 14942317 - 14942385
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||||||| ||||| ||| | || |||||||||| |||||| ||| || |||||||||||    
T  14942317 ttttgttcgatttgaaagagacaagaccattttcgtgagctggtcaaaatgcgaagaccaaaagtgtaa 14942385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 32418142 - 32418206
Alignment:
Q  57 caatataataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||| |||||| || ||||||||||| || ||||| ||||||||||||||  ||||||||||    
T  32418142 caatatagtaaaattaaggcttaattacacttatggtccttgcattttgaccaactcacgaaatt 32418206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 4809433 - 4809311
Alignment:
Q  66 aaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatc 165  Q
    |||| ||| ||||||||||| |||||||| |  ||||||||| |  |||||||| |  || | | ||||| |||| ||||||||| ||||||| |||||     
T  4809433 aaaaaaaaggcttaattacacttttggtcctaccattttgactaactcacgaaaatggtcctatgttttttaaattgaacaaagtcgtccttaaactat- 4809335  T
Q  166 atgttttttgcaattttcgtccta 189  Q
    |||||||||||| |||| ||||||    
T  4809334 atgttttttgcagttttagtccta 4809311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 38007951 - 38008049
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||  || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  38007951 gcttaattacacttttggtccttgcattttgaccaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 38008049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 6949989 - 6949943
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  6949989 gcttaattacacttttggtccttgcattttgaccaactcacgaaatt 6949943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 25336145 - 25336099
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  25336145 gcttaattacacttttggtccttgcattttgaccaactcacgaaatt 25336099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 44219645 - 44219758
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| || |||||||| ||  |||| ||| | ||| |  |||||| |||||||||||| | ||||||| | ||| |||||||||    
T  44219645 gcttaattacacttttggtccttccattttgatcaactcacaaaaatgatcctaccttttttaaatcgaacaaaattgtccttaaattat-atgtttttt 44219743  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  44219744 gcagttttagtccta 44219758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 20495196 - 20495301
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    |||||| || |||||||  | ||||||||||||  |||||||| | |||||| || ||| ||||| |||||| | |||| || |||||||| ||||||||    
T  20495196 ttaatttcacttttggttctcgcattttgaccaactcacgaaaatgatcatgcctcttttaaatctaacaaaatcgtccctaaactatcatattttttgc 20495295  T
Q  177 aatttt 182  Q
    | ||||    
T  20495296 actttt 20495301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 35779889 - 35779840
Alignment:
Q  293 caagttggcactgccacataagtggtcttttgccatatcagcgtttttgg 342  Q
    |||||||||||||||||||| ||  |  ||||||||||||||||||||||    
T  35779889 caagttggcactgccacataggtatttctttgccatatcagcgtttttgg 35779840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 42192797 - 42192744
Alignment:
Q  66 aaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaa 119  Q
    |||||||| ||||||||||| |||||||| | ||||||||||||  ||||||||    
T  42192797 aaaataaaggcttaattacacttttggtcctcgcattttgaccaactcacgaaa 42192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 174
Target Start/End: Original strand, 11539633 - 11539736
Alignment:
Q  70 taaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgt 169  Q
    |||| ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | | ||||| |||||||||||| | ||||||| ||||| ||||    
T  11539633 taaaggcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctattttttttaaatcgaacaaaatcgtccttaaactat-atgt 11539731  T
Q  170 ttttt 174  Q
    |||||    
T  11539732 ttttt 11539736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 16175892 - 16175797
Alignment:
Q  78 taattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||| |||||||| || |||||| ||||  ||||||||||  ||||  || ||| |||||||||||| | ||||||| ||||| |||||||||    
T  16175892 taattacacttttggtccttacatttttaccaactcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 16175797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 34465784 - 34465745
Alignment:
Q  22 ctgacaatagatctcccaactcaataagggatttgcaatat 62  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  34465784 ctgacaatagatc-cccaactcaataagggatttgaaatat 34465745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 7733046 - 7732919
Alignment:
Q  61 ataataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttata 160  Q
    ||||||||| ||| ||||||||||| |||||||| |  |||||||||||  |||||||| | ||| | ||||||| |||||||||||| | ||||||| |    
T  7733046 ataataaaaaaaaggcttaattacacttttggtcctaccattttgaccaactcacgaaaatgatcctatcttttttaaatcgaacaaaatcgtccttaaa 7732947  T
Q  161 ctatcatgttttttgcaattttcgtccta 189  Q
    |||| ||||||||||||||||| ||||||    
T  7732946 ctat-atgttttttgcaattttagtccta 7732919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 5445144 - 5445255
Alignment:
Q  88 tttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcc 187  Q
    ||||||||| ||||||||||||  |||| ||| |  || || ||||||||||| |||||||| ||||| | |||||||||||||||| ||||||| ||||    
T  5445144 tttggtcatcgcattttgaccaactcacaaaactggtcttgcctttttcaaattgaacaaagcagtccatgtactatcatgttttttacaattttagtcc 5445243  T
Q  188 taacctccattc 199  Q
    ||||| ||||||    
T  5445244 taacccccattc 5445255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 88 - 199
Target Start/End: Original strand, 5454188 - 5454299
Alignment:
Q  88 tttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcc 187  Q
    ||||||||| ||||||||||||  |||| ||| |  || || ||||||||||| |||||||| ||||| | |||||||||||||||| ||||||| ||||    
T  5454188 tttggtcatcgcattttgaccaactcacaaaactggtcttgcctttttcaaattgaacaaagcagtccatgtactatcatgttttttacaattttagtcc 5454287  T
Q  188 taacctccattc 199  Q
    ||||| ||||||    
T  5454288 taacccccattc 5454299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 7732489 - 7732602
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||||||||||| ||||||||||| ||  ||||||||||  || |  || ||| |||||||||||| | ||||||| ||||| |||||||||    
T  7732489 gcttaattacatttttggtccttgcattttgatcaactcacgaaattggtcctacctcttttaaatcgaacaaaatcgtccttaaactat-atgtttttt 7732587  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  7732588 gcagttttagtccta 7732602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 189
Target Start/End: Complemental strand, 28688046 - 28687931
Alignment:
Q  72 aatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttt 171  Q
    |||| ||||||||||||| |||| ||||||||||||||  |||||||||| |||||  || ||| |||||||||||| | |||| || ||||| ||||||    
T  28688046 aatgtttaattacatttt-ggtccttgcattttgaccaactcacgaaattgatcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgttt 28687949  T
Q  172 tttgcaattttcgtccta 189  Q
    |||||| |||| ||||||    
T  28687948 tttgcacttttagtccta 28687931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 9393850 - 9393743
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    |||||||||||  |||||||||||||||   ||| ||| |||||||||||||||||| || || ||| | || |||||||||  |||||| |||||||||    
T  9393850 taggactaaaacagcaaaaaacatgatagtttag-gacggttttgttcgatttgaaagaggcaagacaattttcgtgagctgatcaaaatgcgaggatca 9393752  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  9393751 aaagtgtaa 9393743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 9181957 - 9181859
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||| || |||||||||||||| ||||||||||| |||||  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  9181957 gcttaattacacttttgatccttgcattttgaccaattcacgaaattgatcatacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 9181859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 25637741 - 25637630
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| |||||||||||    
T  25637741 ttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atgttttttgc 25637643  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  25637642 agttttagtccta 25637630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 171
Target Start/End: Original strand, 39136687 - 39136783
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttt 171  Q
    ||||||||||| ||||| || ||||||||||||||| |||||||| |  |  || || |||||||||||||||| | |||| || ||||||||||||    
T  39136687 gcttaattacacttttgatccttgcattttgaccagctcacgaaaatggttctgactctttcaaatcgaacaaaatcgtccctaaactatcatgttt 39136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 182
Target Start/End: Original strand, 16917714 - 16917820
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  |||| ||||||| |||||||||||| |  |||||| ||||| |||||||||    
T  16917714 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcatatcttttttaaatcgaacaaaatcctccttaaactat-atgtttttt 16917812  T
Q  175 gcaatttt 182  Q
    ||| ||||    
T  16917813 gcagtttt 16917820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 16081844 - 16081731
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    |||||||||||  ||||||| ||||||||||||||  |||||||||| ||| |  || ||| |||||||||||| |  ||| || ||||| |||||||||    
T  16081844 gcttaattacacctttggtccttgcattttgaccaactcacgaaattgatcctacctcttttaaatcgaacaaaatcatccctaaactat-atgtttttt 16081746  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  16081745 gcagttttagtccta 16081731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Complemental strand, 24929853 - 24929807
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||    
T  24929853 gcttaattacatttttggtccttgcattttgaccaactcacgaaatt 24929807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 461
Target Start/End: Complemental strand, 33880735 - 33880633
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| ||||||||| ||||||   ||| ||| |||||||||||||||||| || ||| || | ||  ||||||||| |||||| |||||| ||    
T  33880735 taggactaaaagtgcaaaaaatatgataatttagggacggttttgttcgatttgaaagaggcagaacaatttttgtgagctggtcaaaatacgaggacca 33880636  T
Q  459 aaa 461  Q
    |||    
T  33880635 aaa 33880633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 467
Target Start/End: Complemental strand, 39136802 - 39136693
Alignment:
Q  357 gttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggat 456  Q
    ||||||||||||| |||| ||| |||||||   ||| |||  ||||||||||||||||| || ||| || | || |||||||||| |||||| | |||||    
T  39136802 gttaggactaaaagtgcataaa-catgatagtttagggacgattttgttcgatttgaaagagtcagaaccattttcgtgagctggtcaaaatgcaaggat 39136704  T
Q  457 caaaagtgtaa 467  Q
    |||||||||||    
T  39136703 caaaagtgtaa 39136693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 9181534 - 9181646
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| || |||||||    
T  9181534 cttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-attttttttg 9181632  T
Q  176 caattttcgtccta 189  Q
    || |||| ||||||    
T  9181633 cagttttagtccta 9181646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 26026320 - 26026416
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||| |||||||| ||| ||||||||||| ||||||||||  ||||  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  26026320 ttaattacacttttggtccttgtattttgaccagctcacgaaattggtcatacctcttttaaatcgaacaaaatcgtccataaactat-atgtttttt 26026416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 35578902 - 35579006
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||||||||||||||||||| |||| ||| |  || || |  ||||||||||||||||   || | || |||||||||||||||||    
T  35578902 ttaattacacttttggtcattgcattttgaccagctcacaaaaatggtcctgccactttcaaatcgaacaaaaccgt-cataaactatcatgttttttgc 35579000  T
Q  177 aatttt 182  Q
    | ||||    
T  35579001 agtttt 35579006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 35579431 - 35579324
Alignment:
Q  74 tgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    |||||||||||| ||||| || | ||||||||| ||| |||||||| | || ||| || ||||||||| ||||||   |||| || ||||||||||||||    
T  35579431 tgcttaattacacttttgatcctcgcattttgatcagctcacgaaaatgattatgcctctttcaaatcaaacaaaaccgtcc-taaactatcatgttttt 35579333  T
Q  174 tgcaatttt 182  Q
    |||| ||||    
T  35579332 tgcagtttt 35579324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 39137004 - 39137072
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| || |||||| | || ||||||| || |||||| ||||||||||||||||||    
T  39137004 ttttgttcgatttaaaagaggcaggaccattttcgtgagcgggtcaaaatacgaggatcaaaagtgtaa 39137072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 39388815 - 39388767
Alignment:
Q  73 atgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  39388815 atgcttaattacacttttggtccttgcattttgaccaactcacgaaatt 39388767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 191
Target Start/End: Original strand, 49064028 - 49064150
Alignment:
Q  68 aataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcat 167  Q
    |||||| ||||||||||| |||||||| | | ||||||||||| |||||||| |  |  || || |||||||| ||||||| |  ||| || ||||||||    
T  49064028 aataaaggcttaattacacttttggtcctcgtattttgaccagctcacgaaaatggtattgcctctttcaaatagaacaaaatcttccataaactatcat 49064127  T
Q  168 gttttttgcaattttcgtcctaac 191  Q
    | |||||||| |||| ||||||||    
T  49064128 g-tttttgcacttttagtcctaac 49064150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 5445248 - 5445186
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaag 418  Q
    ||||||||||||||||| |||||||||||||  | |  ||||| ||||||| |||||||||||    
T  5445248 ggttaggactaaaattgtaaaaaacatgatagtacatggactgctttgttcaatttgaaaaag 5445186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 5454292 - 5454230
Alignment:
Q  356 ggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaag 418  Q
    ||||||||||||||||| |||||||||||||  | |  ||||| ||||||| |||||||||||    
T  5454292 ggttaggactaaaattgtaaaaaacatgatagtacatggactgctttgttcaatttgaaaaag 5454230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 189
Target Start/End: Original strand, 15712366 - 15712479
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| |  |||||||||||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||| || ||||||    
T  15712366 gcttaattacacttttggtcctaccattttgaccaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaactat-atatttttt 15712464  T
Q  175 gcaattttcgtccta 189  Q
    | | |||| ||||||    
T  15712465 gtagttttagtccta 15712479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 27245204 - 27245250
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  27245204 gcttaattacacttttggtccttgcattttgaccaactcacgaaatt 27245250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 786777 - 786881
Alignment:
Q  69 ataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatg 168  Q
    ||||| ||||||||||| ||||| || || |||||||||||  |||||||| |  ||||  |||||| |||||||||||| |  |||||| ||||| |||    
T  786777 ataaaggcttaattacacttttgatccttccattttgaccaactcacgaaaatggtcataccttttttaaatcgaacaaaattttccttaaactat-atg 786875  T
Q  169 tttttt 174  Q
    ||||||    
T  786876 tttttt 786881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 5745642 - 5745746
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||||||| |  |||||||||||  |||||||| |  |||| ||||||| |||||||||||| |  | |||| ||||| |||||||||||    
T  5745642 ttaattacacttttggtcctatcattttgaccaactcacgaaaatggtcatatcttttttaaatcgaacaaaatctttcttaaactat-atgttttttgc 5745740  T
Q  177 aatttt 182  Q
    | ||||    
T  5745741 agtttt 5745746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 5746185 - 5746113
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    ||||||||||| |||||||| |||||||||||| |  |||||||||| ||| || || ||| ||||||||||||    
T  5746185 gcttaattacacttttggtccttgcattttgactaactcacgaaattgatc-tgcctcttttaaatcgaacaaa 5746113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 9393738 - 9393850
Alignment:
Q  76 cttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttg 175  Q
    |||||||||| ||||| || | ||||||||| ||| |||||||| |  || || || ||||||||||||||||   |||| || ||||||||||||||||    
T  9393738 cttaattacacttttgatcctcgcattttgatcagctcacgaaaattgtcttgcctctttcaaatcgaacaaaaccgtcc-taaactatcatgttttttg 9393836  T
Q  176 caattttcgtccta 189  Q
    |  |||| ||||||    
T  9393837 ctgttttagtccta 9393850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 415
Target Start/End: Original strand, 18535249 - 18535370
Alignment:
Q  294 aagttggcactgccacataagtggtcttttgccatatcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagt 393  Q
    ||||||||||||||||||  ||| |||||||||| |||| | |||||||  || ||| ||  |||||| |  |||| ||||||||| || |||   |||     
T  18535249 aagttggcactgccacatgggtgttcttttgccacatcaacatttttggatggtaaattgggggttagaatcaaaagtgcaaaaaatattatagtttagg 18535348  T
Q  394 gactgttttgttcgatttgaaa 415  Q
    ||| ||||||||||||||||||    
T  18535349 gacggttttgttcgatttgaaa 18535370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 5184431 - 5184475
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||    
T  5184431 ttaattacatttttggtccttggattttgaccaactcacgaaatt 5184475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 9394162 - 9394268
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| ||||||||| || |||   ||| ||| |||||||||||||||||||||  ||||| | ||  ||||||||| |||||| ||| || ||    
T  9394162 taggactaaaactgcaaaaaatat-atagtttagggacggttttgttcgatttgaaaaaggtaggaccatttttgtgagctggtcaaaatgcga-gacca 9394259  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  9394260 aaagtgtaa 9394268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 11973945 - 11973913
Alignment:
Q  77 ttaattacatttttggtcattgcattttgacca 109  Q
    |||||||||||||||||| ||||||||||||||    
T  11973945 ttaattacatttttggtccttgcattttgacca 11973913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 467
Target Start/End: Original strand, 35161273 - 35161341
Alignment:
Q  399 ttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    ||||||||||||| ||| ||  ||||| ||||||||||| ||| |||||| | |||| |||||||||||    
T  35161273 ttttgttcgatttaaaagaggtaggaccaattccgtgagttggtcaaaatgcaaggaccaaaagtgtaa 35161341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 35579013 - 35578906
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||| ||||| ||||||||||||||||   || |||| ||||||||||||||||||  | |||||| | ||  ||||||||| |||||| | | || ||    
T  35579013 taggattaaaactgcaaaaaacatgatagttta-tgacggttttgttcgatttgaaagtggcaggaccatttttgtgagctggtcaaaatgcaatgacca 35578915  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  35578914 aaagtgtaa 35578906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 65 - 182
Target Start/End: Complemental strand, 31574280 - 31574164
Alignment:
Q  65 taaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactat 164  Q
    ||||| ||| ||||||||||| |||||||| ||||||||||||||  ||||||||||| ||||  || ||| |||||||||||| | |||| || |||||    
T  31574280 taaaaaaaaggcttaattacacttttggtccttgcattttgaccaactcacgaaattagtcatacctcttttaaatcgaacaaaatcgtccctaaactat 31574181  T
Q  165 catgttttttgcaatttt 182  Q
     |||||||||||| ||||    
T  31574180 -atgttttttgcagtttt 31574164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 5121014 - 5120901
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||  ||||||||||| || |  || ||| |||||||||||| | |||| || ||||| |||||||||    
T  5121014 gcttaattacacttttggtccttgcattttgaccaactcacgaaattattcctacctcttttaaatcgaacaaaatcgtccctaaactat-atgtttttt 5120916  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  5120915 gcagttttagtccta 5120901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 31073687 - 31073574
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||  ||||  || ||| |||||||||||| | |||| || ||||| ||||||| |    
T  31073687 gcttaattacacttttggtccttgcattttgaccagctcacgaaattggtcatacctcttttaaatcgaacaaaattgtccctaaactat-atgttttgt 31073589  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  31073588 gcagttttagtccta 31073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 359 - 467
Target Start/End: Complemental strand, 35163298 - 35163191
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| ||||||||||||||||   ||| ||| |||||||||||||||||| ||||| ||| | ||  ||||||||| |||||| ||||||  |    
T  35163298 taggactaaaactgcaaaaaacatgatagtttag-gacggttttgttcgatttgaaagagacaagaccatttttgtgagctggtcaaaatgcgaggacta 35163200  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  35163199 aaagtgtaa 35163191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 32836541 - 32836428
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| |||| ||| ||||||||||||||| |||||||| |  ||||| || ||||||||||||||||   || |||| ||| | |||||||||    
T  32836541 gcttaattacacttttagtccttgcattttgaccagctcacgaaaatggtcatgcctctttcaaatcgaacaaaaccgttcttaaactgt-atgtttttt 32836443  T
Q  175 gcaattttcgtccta 189  Q
    ||| |||| ||||||    
T  32836442 gcagttttagtccta 32836428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 5114458 - 5114582
Alignment:
Q  64 ataaaataaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatacta 163  Q
    ||||||| || ||||||||||||||||| || |  |||||||| ||  |||||||| |  || | ||||||| |||||||||||| | ||||||| ||||    
T  5114458 ataaaatgaaggcttaattacatttttgatcctaccattttgatcaactcacgaaaatggtcctatcttttttaaatcgaacaaaatcgtccttaaacta 5114557  T
Q  164 tcatgttttttgcaattttcgtccta 189  Q
    | |||||||||||| |||| ||||||    
T  5114558 t-atgttttttgcagttttagtccta 5114582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 35163187 - 35163298
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttttgc 176  Q
    ||||||||| |||| ||| | ||||||||||||| |||| ||| |  || ||||| ||||||||||||||||   |||| || |||||||||||||||||    
T  35163187 ttaattacacttttagtcctcgcattttgaccagctcacaaaaatggtcttgtctctttcaaatcgaacaaaaccgtcc-taaactatcatgttttttgc 35163285  T
Q  177 aattttcgtccta 189  Q
    | |||| ||||||    
T  35163286 agttttagtccta 35163298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 28636293 - 28636339
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||    
T  28636293 gcttaattacatttttggtcattgtattttgaccaactcacgaaatt 28636339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 33096156 - 33096038
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagta----gtccttatactatcatgtt 170  Q
    |||||||| || ||||| || | ||||||| ||||| ||| |||| |  |||||||| ||||||||||||||||       ||||||| |||||||||||    
T  33096156 gcttaattgcacttttgttcttcgcatttttaccagctcatgaaaatggtcatgtctctttcaaatcgaacaaaaccaactgtccttaaactatcatgtt 33096057  T
Q  171 ttttgcaattttcgtccta 189  Q
    |||||||||||| ||||||    
T  33096056 ttttgcaattttagtccta 33096038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 25468852 - 25468947
Alignment:
Q  77 ttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    ||||||||| |||||||| || |||||||||||  ||||||||||  |||| ||| ||| |||||||||||| | |||| || ||||| ||||||||    
T  25468852 ttaattacacttttggtccttacattttgaccaactcacgaaattggtcatatctcttttaaatcgaacaaaatcgtccctaaactat-atgttttt 25468947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 415
Target Start/End: Complemental strand, 33095829 - 33095773
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaa 415  Q
    ||||||||||| ||||||||||||||||   ||| ||| ||||||||||||||||||    
T  33095829 taggactaaaactgcaaaaaacatgatagtttagggacggttttgttcgatttgaaa 33095773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 30250721 - 30250768
Alignment:
Q  74 tgcttaattacatttttggtcattgcattttgaccagttcacgaaatt 121  Q
    |||||||||||| |||||||| ||||||||||||||  ||||||||||    
T  30250721 tgcttaattacaattttggtccttgcattttgaccaactcacgaaatt 30250768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 467
Target Start/End: Complemental strand, 24822997 - 24822860
Alignment:
Q  329 atcagcgtttttgggagggaaaatgatggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaa 428  Q
    |||| ||||||||| ||  ||||||| ||| ||||| |||| |||||||| |||||||  |||| ||| | ||||||||||||||||||| ||| || |     
T  24822997 atcatcgtttttggaagttaaaatgagggtaaggaccaaaagtgcaaaaa-catgataatatagagaccgctttgttcgatttgaaaaaggcagcaccat 24822899  T
Q  429 ttccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    || ||||| |||   ||||| |||| | |||||||||||    
T  24822898 tttcgtgaactgattaaaatccgagaaccaaaagtgtaa 24822860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 467
Target Start/End: Complemental strand, 32836083 - 32836014
Alignment:
Q  398 gttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaaaagtgtaa 467  Q
    |||||||||||||||||| || ||||||   ||  ||||||||| |||||| | ||||||||||||||||    
T  32836083 gttttgttcgatttgaaagaggcaggaccgtttttgtgagctggtcaaaatgcaaggatcaaaagtgtaa 32836014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 33095773 - 33095829
Alignment:
Q  133 tttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtccta 189  Q
    ||||||||||||||||   |||| || |||||||||||||||||| |||| ||||||    
T  33095773 tttcaaatcgaacaaaaccgtccctaaactatcatgttttttgcagttttagtccta 33095829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold1432
Description:

Target: scaffold1432; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 467
Target Start/End: Original strand, 498 - 604
Alignment:
Q  360 aggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatcaa 459  Q
    ||||| |||| |||||||||||| |||   ||| |||||||||||||||||||||| || || ||| | || |||||||| | |||||| ||||||||||    
T  498 aggaccaaaactgcaaaaaacat-atagtttagagactgttttgttcgatttgaaagaggcaagaccattttcgtgagctcgtcaaaatgcgaggatcaa 596  T
Q  460 aagtgtaa 467  Q
    ||||||||    
T  597 aagtgtaa 604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1432; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 188
Target Start/End: Complemental strand, 610 - 498
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgtttttt 174  Q
    ||||||||||| ||||| || | |||||||||| || |||||||| |  || || || ||||||||||||||||  ||||  || ||||| |||||||||    
T  610 gcttaattacacttttgatcctcgcattttgacgagctcacgaaaatggtcttgcctctttcaaatcgaacaaaacagtctctaaactat-atgtttttt 512  T
Q  175 gcaattttcgtcct 188  Q
    ||| |||| |||||    
T  511 gcagttttggtcct 498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 466
Target Start/End: Complemental strand, 61154 - 61036
Alignment:
Q  348 aaaatgatggttaggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaa 447  Q
    ||||||| ||||| ||| ||||||||||||| |||||||  |||| ||||| ||||||| |||| |||| | |||||  | || ||||||  || |||||    
T  61154 aaaatgagggttatgaccaaaattgcaaaaagcatgatagtatagggactgctttgttctattttaaaatggcaggatcattttcgtgagtaggccaaaa 61055  T
Q  448 ttcgaggatcaaaagtgta 466  Q
      |||||||||||||||||    
T  61054 cacgaggatcaaaagtgta 61036  T

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Target: scaffold0057; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 61086 - 61146
Alignment:
Q  132 ttttcaaatcgaacaaagtagtccttatactatcatgttttttgcaattttcgtcctaacc 192  Q
    |||| |||| |||||||| ||||| |||||||||||| ||||||||||||| ||| |||||    
T  61086 ttttaaaatagaacaaagcagtccctatactatcatgctttttgcaattttggtcataacc 61146  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 359 - 467
Target Start/End: Original strand, 205799 - 205906
Alignment:
Q  359 taggactaaaattgcaaaaaacatgatataatagtgactgttttgttcgatttgaaaaagacaggactaattccgtgagctgggcaaaattcgaggatca 458  Q
    ||||||||||| ||||||| ||||||||   ||| ||| |||||||||||||||||| || |||||| | || |||||| ||| ||||||  |||||  |    
T  205799 taggactaaaactgcaaaa-acatgatagtttagggacggttttgttcgatttgaaagaggcaggaccattttcgtgagttggtcaaaatgtgaggacta 205897  T
Q  459 aaagtgtaa 467  Q
    |||||||||    
T  205898 aaagtgtaa 205906  T

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Target: scaffold0108 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 15109 - 15187
Alignment:
Q  70 taaatgcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaa 148  Q
    |||| ||||||||| | |||||||||| ||||||||||||| || ||||| | ||  || || ||||||||||||||||    
T  15109 taaaggcttaattatacttttggtcatcgcattttgaccagctcgcgaaaatgattctgcctctttcaaatcgaacaaa 15187  T

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Target: scaffold0108; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 15643 - 15545
Alignment:
Q  75 gcttaattacatttttggtcattgcattttgaccagttcacgaaattaatcatgtctttttcaaatcgaacaaagtagtccttatactatcatgttttt 173  Q
    ||||||||| |||||||||  | ||||||||| ||| |||||||| |  || || || ||||||||||||||||   |||| || ||||||||||||||    
T  15643 gcttaattagatttttggttctcgcattttgatcagctcacgaaaatggtcctgactctttcaaatcgaacaaaactgtccctaaactatcatgttttt 15545  T

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