View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1433_low_61 (Length: 250)
Name: NF1433_low_61
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_61 |
 | |
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| [»] scaffold0038 (2 HSPs) |
| | |
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| [»] scaffold0455 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28176782 - 28177030
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactg----------gcattaatatatt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
28176782 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactgtagatatgtggcattcatatatt |
28176881 |
T |
|
| Q |
91 |
ggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctatataagaaggaaccgaa |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
28176882 |
ggtcaaaagttgccacttacttccacatagaacataaccacaaaaatttccaaggaattagagtaaaaaggagccgctcgctatataagaaggaaccgaa |
28176981 |
T |
|
| Q |
191 |
aaaatctcaatccccacatcacacaaatcagcaacctaacttagttcat |
239 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
28176982 |
aaaatctcgatccccacatcacacaaatcagcaacctagcttagttcat |
28177030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28219545 - 28219797
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactgg--------------cattaata |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | || |||| ||| |
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| T |
28219545 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaattgcaaagaatgtagatatgcatgcaacattcata |
28219644 |
T |
|
| Q |
87 |
tattggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctatataagaaggaac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28219645 |
tattggtcaaaagttgccacttacttccacatagaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctatataagaaggaac |
28219744 |
T |
|
| Q |
187 |
cgaaaaaatctcaatccccacatcacacaaatcagcaacctaacttagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28219745 |
cgaaaaaatctcaatccccacatcacacaaatcagcaacctaacttagttcat |
28219797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28133459 - 28133210
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactg----------gcattaatatatt |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||| |
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|
| T |
28133459 |
ttattaagtaatttagaatactaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatatt |
28133360 |
T |
|
| Q |
91 |
ggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctatataagaaggaacc-ga |
189 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || |||| || ||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| | |
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|
| T |
28133359 |
ggtcaaaatttgccccttgcttccacgtagaacaaaagcacgaaaatttccaaggaattcgagtaaaaaggagccgctgtctatataagaaggaaccaaa |
28133260 |
T |
|
| Q |
190 |
aaaaatctcaatccccacatcacacaaatcagcaacctaacttagttcat |
239 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||| |||| ||||| |
|
|
| T |
28133259 |
aaaaagctcaatccccacattacacaaatcaccaacctagcttaattcat |
28133210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28220328 - 28220086
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactg----------gcattaatatatt |
90 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||| || | |||||||||||| ||||| ||||||| |
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|
| T |
28220328 |
ttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattcatatatt |
28220232 |
T |
|
| Q |
91 |
ggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgc----tagctatataagaaggaac |
186 |
Q |
| |
|
|||||||| |||||||| |||||| || |||| |||||| ||||||| | ||||||| ||||||||||||||||| || |||||||||||||||| |
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| T |
28220231 |
ggtcaaaatgtgccacttgcttccatgtagaacaaaaccacaaaaatttcctaggaattcgagtaaaaaggagccgctgtttatctatataagaaggaac |
28220132 |
T |
|
| Q |
187 |
c-gaaaaaatctcaatccccacatcacacaaatcagcaacctaact |
231 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28220131 |
caaaaaaaagctcaatccccacattacacaaatcagcaacctaact |
28220086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 28177475 - 28177319
Alignment:
| Q |
76 |
tggcattaatatattggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctata |
175 |
Q |
| |
|
||||||| ||||||||||||||| |||||||| |||||| || |||| |||||| ||||||| | ||||| |||||||||||||||||| ||||| |
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|
| T |
28177475 |
tggcattcatatattggtcaaaatgtgccacttgcttccatgtagaacaaaaccac-aaaatttcttaagaatttgagtaaaaaggagccgctgtctata |
28177377 |
T |
|
| Q |
176 |
taagaaggaaccgaa--aaaatctcaatccccacatcacacaaatcagcaacctaact |
231 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28177376 |
taagaaggaaccgaaaaaaaagctcaatccccacattacacaaatcagcaacctaact |
28177319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 28116666 - 28116828
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaac----------tggcattaatatatt |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||| ||||||| ||||||| |
|
|
| T |
28116666 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcgtaaattaccaattgcaaaaactttaaatatgtggcattcatatatt |
28116765 |
T |
|
| Q |
91 |
ggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagag |
153 |
Q |
| |
|
|||||||| || |||||| | ||| | ||||||| |||||||||| ||| | ||||||||||| |
|
|
| T |
28116766 |
ggtcaaaattttccacttgcctccgcgtaaaacaaaaccacgaaattttcctaggaattagag |
28116828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 28132829 - 28132910
Alignment:
| Q |
144 |
ggaattagagtaaaaaggagccgctagctatataagaaggaac----cgaaaaaatctcaatccccacatcacacaaatcag |
221 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
28132829 |
ggaattagagtagaaaggagccgctctctatataagaaggaacaacaacaaaaaaggtcaatccccacatcacacaaatcag |
28132910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28177524 - 28177484
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaa |
41 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28177524 |
ttattaagtaatttataatattaaatgattcatagtcacaa |
28177484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 20043 - 20295
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactgg--------------cattaata |
86 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| | || |||| ||| |
|
|
| T |
20043 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatacgtcataaaataccaattgcaaagaatgtagatatgcatgcaacattcata |
20142 |
T |
|
| Q |
87 |
tattggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctatataagaaggaac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20143 |
tattggtcaaaagttgccacttacttccacatagaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgctagctatataagaaggaac |
20242 |
T |
|
| Q |
187 |
cgaaaaaatctcaatccccacatcacacaaatcagcaacctaacttagttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20243 |
cgaaaaaatctcaatccccacatcacacaaatcagcaacctaacttagttcat |
20295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 20826 - 20584
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactg----------gcattaatatatt |
90 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||| || ||||| || | |||||||||||| ||||| ||||||| |
|
|
| T |
20826 |
ttattaagtaatttagaatat---atgattcatagtcacaacattaatacatcgtaaaagaccagttgcaaaaactgttgatatgtggcattcatatatt |
20730 |
T |
|
| Q |
91 |
ggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagtaaaaaggagccgc----tagctatataagaaggaac |
186 |
Q |
| |
|
|||||||| |||||||| |||||| || |||| |||||| ||||||| | ||||||| ||||||||||||||||| || |||||||||||||||| |
|
|
| T |
20729 |
ggtcaaaatgtgccacttgcttccatgtagaacaaaaccacaaaaatttcctaggaattcgagtaaaaaggagccgctgtttatctatataagaaggaac |
20630 |
T |
|
| Q |
187 |
c-gaaaaaatctcaatccccacatcacacaaatcagcaacctaact |
231 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20629 |
caaaaaaaagctcaatccccacattacacaaatcagcaacctaact |
20584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 11495 - 11257
Alignment:
| Q |
1 |
ttattaagtaatttagaatattaaatgattcatagtcacaacagtaatatgtcataaaatacgaattgcaaaaactg----------gcattaatatatt |
90 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||| |
|
|
| T |
11495 |
ttattaagtaatttagaatactaaatgattcatagtcacaacaataatatgtcgtaaaataccaattgcaaaaactgcagatatgtggcattcatatatt |
11396 |
T |
|
| Q |
91 |
ggtcaaaagttgccacttacttccacataaaacataaccacgaaaatttacaaggaattagagt-aaaaaggagccgctagctatataagaa-ggaaccg |
188 |
Q |
| |
|
|||||||| ||||| ||| ||||||| || |||| || ||||||||||| ||||||||| |||| |||||||||||||| ||||||||||| ||||| |
|
|
| T |
11395 |
ggtcaaaatttgccccttgcttccacgtagaacaaaagcacgaaaatttccaaggaattcgagtaaaaaaggagccgctgtctatataagaagggaacaa |
11296 |
T |
|
| Q |
189 |
aaaaaatctcaatccccacatcacacaaatcagcaacct |
227 |
Q |
| |
|
|||||| |||||||||||||| |||||||||| |||||| |
|
|
| T |
11295 |
aaaaaagctcaatccccacattacacaaatcaccaacct |
11257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 10735 - 10816
Alignment:
| Q |
144 |
ggaattagagtaaaaaggagccgctagctatataagaaggaac----cgaaaaaatctcaatccccacatcacacaaatcag |
221 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
10735 |
ggaattagagtagaaaggagccgctctctatataagaaggaacaacaacaaaaaaggtcaatccccacatcacacaaatcag |
10816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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