View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_64 (Length: 246)

Name: NF1433_low_64
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_64
NF1433_low_64
[»] chr5 (16 HSPs)
chr5 (27-167)||(10292914-10293055)
chr5 (27-156)||(38010612-38010744)
chr5 (28-156)||(29990004-29990135)
chr5 (27-156)||(19357261-19357391)
chr5 (28-80)||(13015423-13015475)
chr5 (36-156)||(33858537-33858659)
chr5 (30-80)||(37881185-37881235)
chr5 (28-80)||(13086795-13086847)
chr5 (28-80)||(13478122-13478174)
chr5 (27-80)||(39570120-39570173)
chr5 (36-156)||(11607533-11607655)
chr5 (88-138)||(16041865-16041915)
chr5 (113-151)||(42331073-42331111)
chr5 (178-219)||(10293081-10293122)
chr5 (107-156)||(13421008-13421057)
chr5 (120-156)||(9827902-9827938)
[»] chr3 (10 HSPs)
chr3 (27-156)||(47186216-47186348)
chr3 (28-151)||(31187073-31187199)
chr3 (28-156)||(42664715-42664846)
chr3 (29-156)||(34029289-34029419)
chr3 (99-148)||(6023069-6023118)
chr3 (27-80)||(50934541-50934594)
chr3 (36-156)||(44380304-44380426)
chr3 (28-79)||(33509722-33509773)
chr3 (27-80)||(47426391-47426444)
chr3 (97-137)||(25858926-25858966)
[»] chr1 (7 HSPs)
chr1 (28-151)||(8809643-8809769)
chr1 (34-150)||(35534454-35534569)
chr1 (30-156)||(35998296-35998425)
chr1 (26-80)||(2569077-2569131)
chr1 (42-80)||(32676192-32676230)
chr1 (27-80)||(29119401-29119454)
chr1 (88-136)||(17431704-17431752)
[»] chr6 (6 HSPs)
chr6 (28-156)||(34245609-34245740)
chr6 (30-150)||(11113600-11113718)
chr6 (92-156)||(1211843-1211907)
chr6 (92-136)||(10122352-10122396)
chr6 (92-136)||(10126556-10126600)
chr6 (88-136)||(19310338-19310386)
[»] chr4 (13 HSPs)
chr4 (28-156)||(52012820-52012951)
chr4 (27-151)||(52910054-52910179)
chr4 (28-79)||(46719972-46720023)
chr4 (27-80)||(12473745-12473798)
chr4 (27-80)||(12528154-12528207)
chr4 (27-80)||(33249451-33249504)
chr4 (28-156)||(9799361-9799492)
chr4 (29-80)||(49999665-49999716)
chr4 (94-156)||(1796660-1796722)
chr4 (88-138)||(28166930-28166980)
chr4 (27-80)||(21260835-21260888)
chr4 (28-80)||(22343379-22343431)
chr4 (88-132)||(48796042-48796086)
[»] chr2 (7 HSPs)
chr2 (27-156)||(34392080-34392211)
chr2 (29-156)||(23863802-23863931)
chr2 (29-144)||(41095797-41095914)
chr2 (27-80)||(7381733-7381786)
chr2 (94-156)||(4775745-4775807)
chr2 (95-156)||(3668008-3668069)
chr2 (92-151)||(19619354-19619414)
[»] chr8 (3 HSPs)
chr8 (29-80)||(1514846-1514897)
chr8 (29-156)||(24337829-24337958)
chr8 (27-80)||(4708384-4708437)
[»] chr7 (5 HSPs)
chr7 (29-80)||(48250197-48250248)
chr7 (36-156)||(35341586-35341708)
chr7 (29-156)||(48072430-48072559)
chr7 (36-79)||(31306951-31306994)
chr7 (113-161)||(48250285-48250333)
[»] scaffold0263 (1 HSPs)
scaffold0263 (27-80)||(23176-23229)
[»] scaffold0032 (1 HSPs)
scaffold0032 (27-80)||(34235-34288)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 10292914 - 10293055
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnnaaaagg-tgtgccacgtggtacaccttaattggccaatg 125  Q
    |||||||||| |||||||| ||| ||||||| ||| |||||| |||||||||||        ||||| |||||||||||| |||||||||||||||||||    
T  10292914 gccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattttttttaaagggtgtgccacgtggcacaccttaattggccaatg 10293013  T
Q  126 ttatataacattatggtacacaagtgttatcgtgtatattgt 167  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  10293014 ttatataacattatggtacacaagtgttaacgtgtatgttgt 10293055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 38010744 - 38010612
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaa 123  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||          |||  ||||||||| ||| |||||||||||||| ||    
T  38010744 gccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaa 38010645  T
Q  124 tgttatataacattatggtacacaagtgttatc 156  Q
    ||||||||||||| |||||||||||||| ||||    
T  38010644 tgttatataacataatggtacacaagtgctatc 38010612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 29990004 - 29990135
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||          |||  ||||||||| ||  |||||||||||||| |||    
T  29990004 ccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattggctaat 29990103  T
Q  125 gttatataacattatggtacacaagtgttatc 156  Q
    |||||||||||| |||||||||||||| ||||    
T  29990104 gttatataacataatggtacacaagtgctatc 29990135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 19357391 - 19357261
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnnaaaagg-tgtgccacgtggtacaccttaattggccaatg 125  Q
    |||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||        ||||| ||| |||||||  |||   ||||||| |||||    
T  19357391 gccaattagagtgtgccacctaccaatattactttataaatgctttatttgatatattttttaaaggatgtcccacgtgacacattctaattggacaatg 19357292  T
Q  126 ttatataacattatggtacacaagtgttatc 156  Q
     |||||| |||||||||||||||||| ||||    
T  19357291 atatataccattatggtacacaagtgctatc 19357261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 13015423 - 13015475
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  13015423 ccaataagagtgtgccacataccaatgttactttataaatattttatttgata 13015475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 33858659 - 33858537
Alignment:
Q  36 agtgtgccacataccaatgttactttataagtgctttatttg--atannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgttatataa 133  Q
    |||||||||| ||||||||||||||||||| || ||||||||  |||       ||| |||||||||||||  |||   ||||||| ||||| ||||||     
T  33858659 agtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacattctaattgggcaatggtatatac 33858560  T
Q  134 cattatggtacacaagtgttatc 156  Q
    |||||||||||||||||| ||||    
T  33858559 cattatggtacacaagtgctatc 33858537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 37881185 - 37881235
Alignment:
Q  30 aataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||||||||||||||||||||||||||||||||| |  |||||||||||    
T  37881185 aataagagtgtgccacataccaatgttactttataaatattttatttgata 37881235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 13086795 - 13086847
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||||||||||||||||||||||||||| ||||||| |  |||||||||||    
T  13086795 ccaataagagtgtgccacataccaatgttattttataaatattttatttgata 13086847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 13478174 - 13478122
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||||||||||||||||||||| ||||||||||||| |  |||||||||||    
T  13478174 ccaataagagtgtgccacataccattgttactttataaatattttatttgata 13478122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 39570173 - 39570120
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||| ||| ||||||||||||||||||| || |||||||||||    
T  39570173 gccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 39570120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 11607655 - 11607533
Alignment:
Q  36 agtgtgccacataccaatgttactttataagtgctttatttg--atannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgttatataa 133  Q
    |||||||||| ||||||| ||||||||||| || ||||||||  |||       ||| ||||||||||| |  |||   ||||||| ||||| ||||||     
T  11607655 agtgtgccacctaccaatattactttataaatgttttatttgatatacttttttaaagggtgtgccacgggccacattctaattggacaatggtatatat 11607556  T
Q  134 cattatggtacacaagtgttatc 156  Q
    |||||||||||||||||| ||||    
T  11607555 cattatggtacacaagtgctatc 11607533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 16041865 - 16041915
Alignment:
Q  88 aaaaggtgtgccacgtggtacaccttaattggccaatgttatataacatta 138  Q
    |||||||||||||||||| ||||| ||||| ||||| |||||||| |||||    
T  16041865 aaaaggtgtgccacgtggcacaccctaattagccaacgttatataccatta 16041915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 42331111 - 42331073
Alignment:
Q  113 taattggccaatgttatataacattatggtacacaagtg 151  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  42331111 taattggctaatgttatataacataatggtacacaagtg 42331073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 10293081 - 10293122
Alignment:
Q  178 tatatagaaggttaaacgacatttttcgtcccctaagtttca 219  Q
    ||||||||||||||||||| ||||||||| || |||||||||    
T  10293081 tatatagaaggttaaacgatatttttcgttccgtaagtttca 10293122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 13421057 - 13421008
Alignment:
Q  107 acaccttaattggccaatgttatataacattatggtacacaagtgttatc 156  Q
    |||||||| ||| | ||||||||||||||| |||||||||||||| ||||    
T  13421057 acaccttacttgactaatgttatataacataatggtacacaagtgctatc 13421008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 9827902 - 9827938
Alignment:
Q  120 ccaatgttatataacattatggtacacaagtgttatc 156  Q
    |||||| |||||| |||||||||||||||||||||||    
T  9827902 ccaatggtatataccattatggtacacaagtgttatc 9827938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 47186216 - 47186348
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaa 123  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||          |||  ||||||||| ||| |||||||||||||| ||    
T  47186216 gccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatggcacaccttaattggctaa 47186315  T
Q  124 tgttatataacattatggtacacaagtgttatc 156  Q
    ||||||||||||| |||||||||||||| ||||    
T  47186316 tgttatataacataatggtacacaagtgctatc 47186348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 31187199 - 31187073
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    |||||||||||||||||||||||||||||||||||||| || |||||||||||          |||  ||||||||| ||  |||||||||||||| |||    
T  31187199 ccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatattttttaaagtgtgtgccacatgtcacaccttaattggctaat 31187100  T
Q  125 gttatataacattatggtacacaagtg 151  Q
    |||||||||||| ||||||||||||||    
T  31187099 gttatataacataatggtacacaagtg 31187073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 42664715 - 42664846
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    |||||||||||||||||||||||||||||| ||||||| || |||||||||||          |||  ||||||||| ||  ||||||||||| || |||    
T  42664715 ccaataagagtgtgccacataccaatgttattttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaat 42664814  T
Q  125 gttatataacattatggtacacaagtgttatc 156  Q
    |||||||||||| |||||||||||||| ||||    
T  42664815 gttatataacataatggtacacaagtgctatc 42664846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 34029419 - 34029289
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatg 125  Q
    ||||||||||||||||||||| ||||||||||||||| || |||||||||||          |||  ||||| ||| |   |||||||||||||| ||||    
T  34029419 caataagagtgtgccacatactaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgtcacatatcacaccttaattggctaatg 34029320  T
Q  126 ttatataacattatggtacacaagtgttatc 156  Q
    ||||||||||| |||||||||||||| ||||    
T  34029319 ttatataacataatggtacacaagtgctatc 34029289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 6023069 - 6023118
Alignment:
Q  99 cacgtggtacaccttaattggccaatgttatataacattatggtacacaa 148  Q
    ||||||| |||||||||||||||||| |||||||| ||||||||||||||    
T  6023069 cacgtggcacaccttaattggccaatattatataatattatggtacacaa 6023118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 50934541 - 50934594
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  50934541 gccaattagagtgtgccacttaccaatgttactttataaatgcattatttgata 50934594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 44380304 - 44380426
Alignment:
Q  36 agtgtgccacataccaatgttactttataagtgctttatttgatannnnnnn--aaaaggtgtgccacgtggtacaccttaattggccaatgttatataa 133  Q
    |||||| ||| || |||| ||||||||||| ||||||||||||||         ||| |||||||||||||  |||   ||||||| ||||| ||||||     
T  44380304 agtgtgtcacctatcaatattactttataaatgctttatttgatatacttttttaaagggtgtgccacgtgacacattctaattggacaatggtatatac 44380403  T
Q  134 cattatggtacacaagtgttatc 156  Q
    |||||||||||||||||||||||    
T  44380404 cattatggtacacaagtgttatc 44380426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 33509722 - 33509773
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgat 79  Q
    ||||| |||||||||||| ||||||| ||||||||||  |||||||||||||    
T  33509722 ccaattagagtgtgccacctaccaatattactttatagatgctttatttgat 33509773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 47426391 - 47426444
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||| ||| || |||||||||||||||  ||||||||||||||    
T  47426391 gccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgata 47426444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 25858966 - 25858926
Alignment:
Q  97 gccacgtggtacaccttaattggccaatgttatataacatt 137  Q
    ||||||||| ||||| |||||||||||||||| ||||||||    
T  25858966 gccacgtggcacaccctaattggccaatgttacataacatt 25858926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 8809769 - 8809643
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    |||||||||||||||||| ||||||||||||||||||| || |||||||||||          |||  ||||||||| ||  |||||||||||||| |||    
T  8809769 ccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattggctaat 8809670  T
Q  125 gttatataacattatggtacacaagtg 151  Q
    |||||||||||| ||||||||||||||    
T  8809669 gttatataacataatggtacacaagtg 8809643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 35534454 - 35534569
Alignment:
Q  34 agagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgttatataa 133  Q
    |||||||||||||||| ||||| | |||||||||| ||||||| |||       ||| |||||||||| ||  |||||||||||||||||| ||||||||    
T  35534454 agagtgtgccacatactaatgtcaatttataagtgttttatttaatatttttt-aaagggtgtgccacatgacacaccttaattggccaatattatataa 35534552  T
Q  134 cattatggtacacaagt 150  Q
    ||||||||| |||||||    
T  35534553 cattatggttcacaagt 35534569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 156
Target Start/End: Original strand, 35998296 - 35998425
Alignment:
Q  30 aataagagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnn---aaaaggtgtgccacgtggtacaccttaattggccaatgt 126  Q
    ||||||||||||||||||| |||||||| |||||||||| ||||||| |||          |||  ||||||||| ||| ||| |||||||||| |||||    
T  35998296 aataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgttttttaaagtgtgtgccacatggcacatcttaattggctaatgt 35998395  T
Q  127 tatataacattatggtacacaagtgttatc 156  Q
    |||||||||| |||||||||| ||| ||||    
T  35998396 tatataacataatggtacacaggtgctatc 35998425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 2569077 - 2569131
Alignment:
Q  26 tgccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    ||||||| |||||||||||| |||||||||||| |||  | ||||||||||||||    
T  2569077 tgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgata 2569131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 32676192 - 32676230
Alignment:
Q  42 ccacataccaatgttactttataagtgctttatttgata 80  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  32676192 ccacctaccaatgttactttataaatgctttatttgata 32676230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 29119454 - 29119401
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||| || || ||||||||||||  ||||||||||||||    
T  29119454 gccaattagagtgtgccacctatcattgttactttatagatgctttatttgata 29119401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 17431704 - 17431752
Alignment:
Q  88 aaaaggtgtgccacgtggtacaccttaattggccaatgttatataacat 136  Q
    |||||||||||||| ||| ||||| | ||||| ||||||||||||||||    
T  17431704 aaaaggtgtgccacatggcacaccctgattggacaatgttatataacat 17431752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 34245609 - 34245740
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnn---aaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    ||||||| |||||||||| ||||||||||||||||||| | ||||||||||||          |||  ||||||||| ||  |||||||||||||| |||    
T  34245609 ccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatatatgttttttaaagtgtgtgccacatgacacaccttaattggctaat 34245708  T
Q  125 gttatataacattatggtacacaagtgttatc 156  Q
    ||||||||| || |||||||||||||||||||    
T  34245709 gttatataatataatggtacacaagtgttatc 34245740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 11113600 - 11113718
Alignment:
Q  30 aataagagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgttat 129  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||        ||| | || ||||| ||| |||||||||||| ||||||||||    
T  11113600 aataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat--ttttttaaaggatgcgccacatggcacaccttaattgaccaatgttat 11113697  T
Q  130 ataacattatggtacacaagt 150  Q
    ||| |||||||||||| ||||    
T  11113698 ataccattatggtacataagt 11113718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 1211907 - 1211843
Alignment:
Q  92 ggtgtgccacgtggtacaccttaattggccaatgttatataacattatggtacacaagtgttatc 156  Q
    |||||||||||||| |||   |||| || ||||| |||||| |||||||||||||||||| ||||    
T  1211907 ggtgtgccacgtggcacattctaatggggcaatggtatataccattatggtacacaagtgatatc 1211843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 10122396 - 10122352
Alignment:
Q  92 ggtgtgccacgtggtacaccttaattggccaatgttatataacat 136  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||||    
T  10122396 ggtgtgccacgtggcacaccctgattggacaatgttatataacat 10122352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Original strand, 10126556 - 10126600
Alignment:
Q  92 ggtgtgccacgtggtacaccttaattggccaatgttatataacat 136  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||||    
T  10126556 ggtgtgccacgtggcacacccttattggacaatgttatataacat 10126600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 19310338 - 19310386
Alignment:
Q  88 aaaaggtgtgccacgtggtacaccttaattggccaatgttatataacat 136  Q
    |||||||||||||||||| ||| | | ||||| ||||||||||||||||    
T  19310338 aaaaggtgtgccacgtggcacatccttattggacaatgttatataacat 19310386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 52012820 - 52012951
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata---nnnnnnnaaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    ||||||| |||||||||||||||||||||||||||||| || |||||||||||          |||  ||||||||| ||  ||||||||||| || |||    
T  52012820 ccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatatatgttttttaaagtgtgtgccacatgtcacaccttaattagctaat 52012919  T
Q  125 gttatataacattatggtacacaagtgttatc 156  Q
    |||||||||||| |||||||||||||| ||||    
T  52012920 gttatataacataatggtacacaagtgctatc 52012951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 52910179 - 52910054
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgat-annnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatg 125  Q
    |||||| | |||||||||| ||||||| ||||||||||| ||||||||||||| |       ||||||| |||||||||| ||||| ||||||  |||||    
T  52910179 gccaattaaagtgtgccacctaccaatattactttataaatgctttatttgataaaaaaattaaaaggtatgccacgtggcacaccctaattgatcaatg 52910080  T
Q  126 ttatataacattatggtacacaagtg 151  Q
     |||||| ||| |||||||| |||||    
T  52910079 gtatataccataatggtacataagtg 52910054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 46719972 - 46720023
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgat 79  Q
    |||||||||||||||||||||| ||||||||||||||| | |||||||||||    
T  46719972 ccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 12473745 - 12473798
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  12473745 gccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12473798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 12528154 - 12528207
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  12528154 gccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12528207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 33249504 - 33249451
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||| ||| ||||||||||||||||||| ||||||||||||||    
T  33249504 gccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgata 33249451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 156
Target Start/End: Complemental strand, 9799492 - 9799361
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgatannnnnnn---aaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    |||| |||| |||||||||||||||||||||||||||| || ||||||| |||          |||  ||||| ||| ||  ||||||||||| || |||    
T  9799492 ccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgttttttaaagtgtgtgtcacatgtcacaccttaattagctaat 9799393  T
Q  125 gttatataacattatggtacacaagtgttatc 156  Q
    |||||||||||| |||||||||||||| ||||    
T  9799392 gttatataacataatggtacacaagtgctatc 9799361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Complemental strand, 49999716 - 49999665
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||| |||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  49999716 caattagagtgtgtcacataccaatgttattttataaatgctttatttgata 49999665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 1796660 - 1796722
Alignment:
Q  94 tgtgccacgtggtacaccttaattggccaatgttatataacattatggtacacaagtgttatc 156  Q
    |||| ||||||| |||  |||||||| ||||| |||||| |||||||||||||||||||||||    
T  1796660 tgtgtcacgtggcacaatttaattggacaatggtatataccattatggtacacaagtgttatc 1796722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 28166980 - 28166930
Alignment:
Q  88 aaaaggtgtgccacgtggtacaccttaattggccaatgttatataacatta 138  Q
    |||||||||||||||||| ||||| | ||| ||||||||||||||||||||    
T  28166980 aaaaggtgtgccacgtggcacaccctgattcgccaatgttatataacatta 28166930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 21260835 - 21260888
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||| ||| ||||||||||||||||||| || |||||||||||    
T  21260835 gccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 21260888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 22343379 - 22343431
Alignment:
Q  28 ccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    ||||| |||||||| ||  || |||||||||||||||| ||||||||||||||    
T  22343379 ccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgata 22343431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 48796042 - 48796086
Alignment:
Q  88 aaaaggtgtgccacgtggtacaccttaattggccaatgttatata 132  Q
    |||||||||||||||||| ||||| | ||||| ||||||||||||    
T  48796042 aaaaggtgtgccacgtggcacaccctgattgggcaatgttatata 48796086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 34392211 - 34392080
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttg--atannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaat 124  Q
    |||||| |||||||||||| ||||||| ||||||||||| |||||||||||  |||       ||| |||||||||| ||| |||   ||||||| ||||    
T  34392211 gccaattagagtgtgccacctaccaatcttactttataaatgctttatttgatatatttttttaaagggtgtgccacatggcacaatctaattggacaat 34392112  T
Q  125 gttatataacattatggtacacaagtgttatc 156  Q
    | |||||| |||||||||||||||||| ||||    
T  34392111 ggtatataccattatggtacacaagtgctatc 34392080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 23863931 - 23863802
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttg--atannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgt 126  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||  |||       ||| |||||||||| ||| |||   ||||||| |||||     
T  23863931 caattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtgccacatggcacattctaattggacaatga 23863832  T
Q  127 tatataacattatggtacacaagtgttatc 156  Q
    |||||| ||||||||||||| |||| ||||    
T  23863831 tatatatcattatggtacactagtgctatc 23863802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 41095914 - 41095797
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttgat--annnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgt 126  Q
    |||| ||||||  |||| ||||||||||||||||||| |||||||||||||  |       ||||||| |||||| ||| ||||| ||| |||||||||     
T  41095914 caattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttttaaaaggtatgccacatggcacaccctaaatggccaatgg 41095815  T
Q  127 tatataacattatggtac 144  Q
    |||||| |||||||||||    
T  41095814 tatataccattatggtac 41095797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 7381733 - 7381786
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||  ||||||||||||||||||| | ||||||||||||    
T  7381733 gccaattagagtgtgccatctaccaatgttactttataaattctttatttgata 7381786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 4775745 - 4775807
Alignment:
Q  94 tgtgccacgtggtacaccttaattggccaatgttatataacattatggtacacaagtgttatc 156  Q
    |||||||| ||| |||  |||||||| ||||| |||||| ||||||||||||||| |||||||    
T  4775745 tgtgccacatggcacaatttaattggacaatggtatataccattatggtacacaaatgttatc 4775807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 3668069 - 3668008
Alignment:
Q  95 gtgccacgtggtacaccttaattggccaatgttatataacattatggtacacaagtgttatc 156  Q
    ||||||| ||| ||| |||||||||| ||| |||||||| || |||||||||||||| ||||    
T  3668069 gtgccacatggcacatcttaattggctaatattatataatataatggtacacaagtgctatc 3668008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 19619414 - 19619354
Alignment:
Q  92 ggtgtgccacgtggtacaccttaattggccaatgttatataacatta-tggtacacaagtg 151  Q
    |||||||||||||  | |||||| |||||||||||||||||| || | |||||||||||||    
T  19619414 ggtgtgccacgtgacataccttatttggccaatgttatataatatcagtggtacacaagtg 19619354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 1514846 - 1514897
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  1514846 caataagagtgtaccacataccaatgttactttataaatgttttatttgata 1514897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 24337958 - 24337829
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttg--atannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgt 126  Q
    |||| |||||||||||  ||||||||||||||||||  |||||||||||  |||       ||| |||||||||| | | |||   ||||||| |||||     
T  24337958 caattagagtgtgccatctaccaatgttactttatagatgctttatttgatatatatttttaaagggtgtgccacatagcacattctaattggacaatgg 24337859  T
Q  127 tatataacattatggtacacaagtgttatc 156  Q
    |||||| |||||||||||||||||| ||||    
T  24337858 tatataccattatggtacacaagtgctatc 24337829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 4708437 - 4708384
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| | |||||| ||| ||||||||||||||||||| || |||||||||||    
T  4708437 gccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgata 4708384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 48250197 - 48250248
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||| |||||||||||| ||||||||||||||||||  ||||||||||||||    
T  48250197 caattagagtgtgccacctaccaatgttactttatagatgctttatttgata 48250248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 35341586 - 35341708
Alignment:
Q  36 agtgtgccacataccaatgttactttataagtgctttatttg--atannnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgttatataa 133  Q
    |||||||||| ||||||||||||||||||| || ||||||||  |||       ||| |||||||||||||  |||   ||||||| ||||| ||||||     
T  35341586 agtgtgccacctaccaatgttactttataaatgttttatttgatatacttttttaaagggtgtgccacgtgacacattctaattggacaatgatatatat 35341685  T
Q  134 cattatggtacacaagtgttatc 156  Q
    |||||||||| | ||||||||||    
T  35341686 cattatggtagataagtgttatc 35341708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 48072430 - 48072559
Alignment:
Q  29 caataagagtgtgccacataccaatgttactttataagtgctttatttgat--annnnnnnaaaaggtgtgccacgtggtacaccttaattggccaatgt 126  Q
    |||| ||||||||||||||  |||||||| ||||||| |  ||||||||||  |       ||| |||||||||||||| |||   ||||||| |||||     
T  48072430 caattagagtgtgccacatttcaatgttattttataaatattttatttgatgtatttttttaaagggtgtgccacgtggcacattctaattgggcaatgg 48072529  T
Q  127 tatataacattatggtacacaagtgttatc 156  Q
    |||||| |||||||||||||||||| ||||    
T  48072530 tatataccattatggtacacaagtgctatc 48072559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 31306994 - 31306951
Alignment:
Q  36 agtgtgccacataccaatgttactttataagtgctttatttgat 79  Q
    ||||||| || ||||||||||||||||||| |||||||||||||    
T  31306994 agtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 48250285 - 48250333
Alignment:
Q  113 taattggccaatgttatataacattatggtacacaagtgttatcgtgta 161  Q
    ||||||| ||||| |||||| |||||||||||||||||| |||| ||||    
T  48250285 taattggacaatggtatataccattatggtacacaagtgctatcctgta 48250333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 23229 - 23176
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||| ||||||| ||||||||||| |  |||||||||||    
T  23229 gccaattagagtgtgccacctaccaattttactttataaatattttatttgata 23176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 34235 - 34288
Alignment:
Q  27 gccaataagagtgtgccacataccaatgttactttataagtgctttatttgata 80  Q
    |||||| |||||||||||| ||||||| ||||||||||| |  |||||||||||    
T  34235 gccaattagagtgtgccacttaccaatattactttataaatattttatttgata 34288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University