View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_66 (Length: 245)
Name: NF1433_low_66
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 44139624 - 44139859
Alignment:
| Q |
1 |
ttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgcta |
100 |
Q |
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| T |
44139624 |
ttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgcta |
44139723 |
T |
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| Q |
101 |
gatatattttcaagtgttgattcttatcttatgctggtatttactatttagtgatgcttcagtggctgctttcctacaagaaatgtctgagaac-nnnnn |
199 |
Q |
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| T |
44139724 |
gatatattttcaagtgttgattcttatcttatgctggtatttactatttattgatgcttcagtggctgctttcctacaagaaatgtctgagaactttttt |
44139823 |
T |
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| Q |
200 |
nnnaaccacaagaattgtgggtaatttgtatctgtg |
235 |
Q |
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| T |
44139824 |
tttaaccacaagaattgtgggtaatttgtatctgtg |
44139859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 40888394 - 40888629
Alignment:
| Q |
1 |
ttatttgttttccagctgagtattgtctaccgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgcta |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40888394 |
ttatttgttttccagctgagtattgtctatcgttggttcgtgttgggggaatgtttattgctgccaagggtcatgatcctgaggtatgtaacagatgcta |
40888493 |
T |
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| Q |
101 |
gatatattttcaagtgttgattcttatcttatgctggtatttactatttagtgatgcttcagtggctgctttcctacaagaaatgtctgagaac-nnnnn |
199 |
Q |
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| T |
40888494 |
gatatattttcaagtgttgattcttatcttatgctggtatttactatttaatgatgcttcagtggctgctttcctacaagaaatgtctgagaactttttt |
40888593 |
T |
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| Q |
200 |
nnnaaccacaagaattgtgggtaatttgtatctgtg |
235 |
Q |
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| T |
40888594 |
tttaaccacaagaattgtgggtaatttgtatctgtg |
40888629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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