View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_7 (Length: 538)
Name: NF1433_low_7
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 32874949 - 32874508
Alignment:
| Q |
18 |
aattataaccaagctttaagagataaggtgaatgcagtagcataaaccataaccttacaaatccaatataacaggaacaaaaaataaatatctctaagat |
117 |
Q |
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| T |
32874949 |
aattataaccaagctttaagagataaggtgaatgcagtagcataaaccataaccttacaaatccaatataacaggaacaaaaaataaatatctctaagat |
32874850 |
T |
|
| Q |
118 |
ttttgttgttctttttgtctatatgctaattatttttgtcattagttccatgtgatatttttgtgagtaaaatgtgtgcctggtatattcttgcagattt |
217 |
Q |
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| T |
32874849 |
ttttgttgttctttttgtctatatgctaattatttttgtcattagttccatgtgatatttttgtgagtaaaatgtgtgcctggtatattcttgcagattt |
32874750 |
T |
|
| Q |
218 |
cttctgtatctaaaacgtgacaaaaaacttatagcaattttgtcattatactcatatgattgattaaacataattgaccatgtttgtggctagtgtcagt |
317 |
Q |
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| T |
32874749 |
cttctgtatctaaaacgtgacaaaaaacttatagcaattttgtcattatactcatatgattgattaaacataattgaccatgtttgtggctagtgtcagt |
32874650 |
T |
|
| Q |
318 |
tgaagaaccaaaacaacttctagcagaaagttgagctagcagtgtctgaaatcacaagaaattttgagcgtttctgggagaaccacgtaatatctaccag |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32874649 |
tgaagaaccaaaacaacttctagcagaaagttgagctagcagtgtctgaaatcacaagaaattttgagcgtttctgggagaacgacgtaatatctaccag |
32874550 |
T |
|
| Q |
418 |
atagtggtgccaagaaatttgtaaaatggaggcaacctacac |
459 |
Q |
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| T |
32874549 |
atagtggtgtcaagaaatttgtaaaatggaggcaacctacac |
32874508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 489 - 529
Target Start/End: Complemental strand, 32874478 - 32874438
Alignment:
| Q |
489 |
tattttactttattattgtatatgattgaacctattcatct |
529 |
Q |
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| T |
32874478 |
tattttactttattattgtatatgattgaacctattcatct |
32874438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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