View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1433_low_70 (Length: 241)
Name: NF1433_low_70
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_70 |
 | |
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| [»] scaffold0455 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 28176723 - 28176499
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28176723 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactatacattctctttgtaaatagtataga |
28176624 |
T |
|
| Q |
104 |
agcatagattactgatacaattcttttattaaagagtagacttaaatatatannnnnnnccatgttttttattccacgtaggaacgagaatgagcacacc |
203 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
28176623 |
agtatagattactgatacaattcttttattaaagagtagacttaaatatatatttttttccatgttttttattccacgttggaacgagaatgagcacacc |
28176524 |
T |
|
| Q |
204 |
aggctttgaagagggtaatatatgt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
28176523 |
aggctttgaagagggtaatatatgt |
28176499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 28133518 - 28133740
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
28133518 |
aactaaataacattcttatagtcaaatttattaacgggtatataatttgaagcgaaaaagtcatcttaaaactatgcattctctttgtaaatagtataga |
28133617 |
T |
|
| Q |
104 |
agcatagattactgatacaattcttttattaaagagtagacttaaatatatannnnnnnccatgttttttattccacgtaggaacgagaatgagcacacc |
203 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| || |||||||||||| |||| ||||||||||||| |||||||||||| ||||||| | |
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|
| T |
28133618 |
agtatagattactgatacaattc-tttattaaagaataaacttaaatatat-tttttctccatattttttattccacttaggaacgagaaagagcacaac |
28133715 |
T |
|
| Q |
204 |
aggctttgaagagggtaatatatgt |
228 |
Q |
| |
|
| |||||||||||||| ||||||| |
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|
| T |
28133716 |
atgctttgaagagggtgttatatgt |
28133740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 28219488 - 28219262
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
28219488 |
aactaaataacattcttatagtcaaatttattaacgggtatataattggaagcgaaaatctcagcttaaaactatgcattctctttgtaaatagtatata |
28219389 |
T |
|
| Q |
104 |
agcatagattactgatacaattcttttattaaagagtagacttaaatatatannnnnnncca---tgttttttattccacgtaggaacgagaatgagcac |
200 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||||| | ||||||||||||| | | | ||||||||||||||||||||||||||||||||| |
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|
| T |
28219388 |
agtatagattagtgatacaattc-tttattaaagaattgacttaaatatatttttttctctatatttttttttattccacgtaggaacgagaatgagcac |
28219290 |
T |
|
| Q |
201 |
accaggctttgaagagggtaatatatgt |
228 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
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|
| T |
28219289 |
cacatgctttgaagagggtactatatgt |
28219262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 154
Target Start/End: Complemental strand, 28116607 - 28116458
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||| ||||| |||||||| |||||||||||||| |
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|
| T |
28116607 |
aactaaataacattcttatagtcaaattaatttacgcgtatataattggaagcgaaaaaatcagcttaatactatgcattctcttcgtaaatagtataga |
28116508 |
T |
|
| Q |
104 |
agcatagattactgatacaattcttttattaaagagtagacttaaatatat |
154 |
Q |
| |
|
|| |||||| | ||||||||||| ||||||||||| || |||||||||||| |
|
|
| T |
28116507 |
agtatagatcattgatacaattc-tttattaaagaatatacttaaatatat |
28116458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 28177583 - 28177684
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||||||| || ||||||||| ||||||||||||| |
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|
| T |
28177583 |
aactaaataacattcttataatcaaatatattaacgggtatataattggaagccaaaaagtcagcttaaaacaatgtattctctttataaatagtataga |
28177682 |
T |
|
| Q |
104 |
ag |
105 |
Q |
| |
|
|| |
|
|
| T |
28177683 |
ag |
28177684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 28220387 - 28220433
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataatt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
28220387 |
aactaaataacattcttatagtcaaatttattaacgggtatataatt |
28220433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 228
Target Start/End: Original strand, 11554 - 11776
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11554 |
aactaaataacattcttatagtcaaatttattaacgggtatataatttgaagcgaaaaagtcatcttaaaactatgcattctctttgtaaatagtataga |
11653 |
T |
|
| Q |
104 |
agcatagattactgatacaattcttttattaaagagtagacttaaatatatannnnnnnccatgttttttattccacgtaggaacgagaatgagcacacc |
203 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||| || |||||||||||| |||| ||||||||||||| |||||||||||| ||||||| | |
|
|
| T |
11654 |
agtatagattactgatacaattc-tttattaaagaataaacttaaatatat-tttttctccatattttttattccacttaggaacgagaaagagcacaac |
11751 |
T |
|
| Q |
204 |
aggctttgaagagggtaatatatgt |
228 |
Q |
| |
|
| |||||||||||||| ||||||| |
|
|
| T |
11752 |
atgctttgaagagggtgttatatgt |
11776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 19986 - 19760
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtataga |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
19986 |
aactaaataacattcttatagtcaaatttattaacgggtatataattggaagcgaaaatctcagcttaaaactatgcattctctttgtaaatagtatata |
19887 |
T |
|
| Q |
104 |
agcatagattactgatacaattcttttattaaagagtagacttaaatatatannnnnnncca---tgttttttattccacgtaggaacgagaatgagcac |
200 |
Q |
| |
|
|| |||||||| ||||||||||| ||||||||||| | ||||||||||||| | | | ||||||||||||||||||||||||||||||||| |
|
|
| T |
19886 |
agtatagattagtgatacaattc-tttattaaagaattgacttaaatatatttttttctctatatttttttttattccacgtaggaacgagaatgagcac |
19788 |
T |
|
| Q |
201 |
accaggctttgaagagggtaatatatgt |
228 |
Q |
| |
|
|| ||||||||||||||| ||||||| |
|
|
| T |
19787 |
cacatgctttgaagagggtactatatgt |
19760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 20885 - 20931
Alignment:
| Q |
4 |
aactaaataacattcttatagtcaaatttatttacgggtatataatt |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20885 |
aactaaataacattcttatagtcaaatttattaacgggtatataatt |
20931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 10214370 - 10214407
Alignment:
| Q |
8 |
aaataacattcttatagtcaaatttatttacgggtata |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10214370 |
aaataacattcttatagtcaaatttatttaagggtata |
10214407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 8723319 - 8723354
Alignment:
| Q |
10 |
ataacattcttatagtcaaatttatttacgggtata |
45 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8723319 |
ataacattcttatagtcaaatttatttaagggtata |
8723354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 45
Target Start/End: Original strand, 7192348 - 7192382
Alignment:
| Q |
11 |
taacattcttatagtcaaatttatttacgggtata |
45 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7192348 |
taacattcttatagtcaaatttatttaagggtata |
7192382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 37
Target Start/End: Complemental strand, 19062861 - 19062832
Alignment:
| Q |
8 |
aaataacattcttatagtcaaatttattta |
37 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19062861 |
aaataacattcttatagtcaaatttattta |
19062832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 7301585 - 7301528
Alignment:
| Q |
43 |
atataattgaaagcgaaaaagtcagcttaaaactataaattctctttgtaaatagtat |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
7301585 |
atataattgaaagggaaaaagtcaatccaaaaccataaattctctttgtatatagtat |
7301528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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