View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_72 (Length: 240)

Name: NF1433_low_72
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_72
NF1433_low_72
[»] chr7 (3 HSPs)
chr7 (1-235)||(32850795-32851029)
chr7 (134-177)||(32853347-32853390)
chr7 (9-37)||(37074176-37074204)
[»] chr8 (3 HSPs)
chr8 (7-84)||(27179514-27179591)
chr8 (12-45)||(44682595-44682628)
chr8 (9-37)||(4986670-4986698)
[»] chr5 (1 HSPs)
chr5 (1-37)||(19509634-19509670)
[»] chr4 (2 HSPs)
chr4 (9-37)||(15647653-15647681)
chr4 (3-43)||(51071317-51071357)
[»] chr3 (1 HSPs)
chr3 (5-37)||(23820064-23820096)
[»] chr2 (1 HSPs)
chr2 (9-37)||(21966201-21966229)
[»] chr1 (2 HSPs)
chr1 (7-39)||(14342592-14342624)
chr1 (9-37)||(39431793-39431821)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 32851029 - 32850795
Alignment:
Q  1 cgaccaaatcataagccttttcaaaatccactttaaaaatcaaacgttcatgtttcctcctcttagccaaatccactacctcattaacaatcatcatcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32851029 cgaccaaatcataagccttttcaaaatccactttaaaaatcaaacgttcatgtttcctcctcttagccaaatccactacctcattaacaatcatcatcca 32850930  T
Q  101 atcgaccaagcttcgaccttccaagaaaagccaccatctctttcagtgaactgttggttagttagagtttctgatttaattgtgagaactttgtcccctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32850929 atcgaccaagcttcgaccttccaagaaaagccaccatctctttcagtgaactgttggttagttagagtttctgatttaattgtgagaactttgtcccctc 32850830  T
Q  201 acttgtgcatctgtagtctctaccttgcttctgtg 235  Q
    |||||||||||||||||||||||||||||||||||    
T  32850829 acttgtgcatctgtagtctctaccttgcttctgtg 32850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 177
Target Start/End: Complemental strand, 32853390 - 32853347
Alignment:
Q  134 ccatctctttcagtgaactgttggttagttagagtttctgattt 177  Q
    |||||| |||||||||| |||||||||||||| |||||||||||    
T  32853390 ccatctatttcagtgaattgttggttagttagggtttctgattt 32853347  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 37074204 - 37074176
Alignment:
Q  9 tcataagccttttcaaaatccactttaaa 37  Q
    |||||||||||||||||||||||||||||    
T  37074204 tcataagccttttcaaaatccactttaaa 37074176  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 27179591 - 27179514
Alignment:
Q  7 aatcataagccttttcaaaatccactttaaaaatcaaacgttcatgtttcctcctcttagccaaatccactacctcat 84  Q
    |||| ||||| |||||||||| |||||| ||||| ||| | ||| ||||||||||||| || |||||||| |||||||    
T  27179591 aatcgtaagctttttcaaaattcacttttaaaattaaaagctcacgtttcctcctcttggctaaatccaccacctcat 27179514  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 44682628 - 44682595
Alignment:
Q  12 taagccttttcaaaatccactttaaaaatcaaac 45  Q
    |||||||||||||||||||| |||||||||||||    
T  44682628 taagccttttcaaaatccaccttaaaaatcaaac 44682595  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 4986698 - 4986670
Alignment:
Q  9 tcataagccttttcaaaatccactttaaa 37  Q
    |||||||||||||||||||||||||||||    
T  4986698 tcataagccttttcaaaatccactttaaa 4986670  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19509634 - 19509670
Alignment:
Q  1 cgaccaaatcataagccttttcaaaatccactttaaa 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  19509634 cgaccaaatcatacgccttttcaaaatccactttaaa 19509670  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 15647681 - 15647653
Alignment:
Q  9 tcataagccttttcaaaatccactttaaa 37  Q
    |||||||||||||||||||||||||||||    
T  15647681 tcataagccttttcaaaatccactttaaa 15647653  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 51071357 - 51071317
Alignment:
Q  3 accaaatcataagccttttcaaaatccactttaaaaatcaa 43  Q
    ||||| ||||| ||||||||||||||||| |||||||||||    
T  51071357 accaagtcatacgccttttcaaaatccaccttaaaaatcaa 51071317  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 23820064 - 23820096
Alignment:
Q  5 caaatcataagccttttcaaaatccactttaaa 37  Q
    ||||||||||||||||||||||||||| |||||    
T  23820064 caaatcataagccttttcaaaatccaccttaaa 23820096  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 21966201 - 21966229
Alignment:
Q  9 tcataagccttttcaaaatccactttaaa 37  Q
    |||||||||||||||||||||||||||||    
T  21966201 tcataagccttttcaaaatccactttaaa 21966229  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 14342592 - 14342624
Alignment:
Q  7 aatcataagccttttcaaaatccactttaaaaa 39  Q
    |||||||||| ||||||||||||||||||||||    
T  14342592 aatcataagctttttcaaaatccactttaaaaa 14342624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 37
Target Start/End: Original strand, 39431793 - 39431821
Alignment:
Q  9 tcataagccttttcaaaatccactttaaa 37  Q
    |||||||||||||||||||||||||||||    
T  39431793 tcataagccttttcaaaatccactttaaa 39431821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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