View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_77 (Length: 237)

Name: NF1433_low_77
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_77
NF1433_low_77
[»] chr2 (3 HSPs)
chr2 (1-134)||(32075663-32075798)
chr2 (146-224)||(32072195-32072273)
chr2 (192-224)||(32064915-32064947)


Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 32075663 - 32075798
Alignment:
Q  1 tctatgtgaggtgcattttcaggtatcctactctttgacccaaaaatagnnnnnnn--ttgccagactcaaccaattaggcaaataagaagatatcatag 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||| ||||||||||||||||||||    
T  32075663 tctatgtgaggtgcattttcaggtatcctactctttgacccaaaaatagaaaaaaaaattgccagactcaaccaattagacaaataagaagatatcatag 32075762  T
Q  99 tagcatatgtcttactctcggtgatagtgatttttc 134  Q
    |||||| |||||||||||||| |||| |||||||||    
T  32075763 tagcatctgtcttactctcggcgatattgatttttc 32075798  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 224
Target Start/End: Original strand, 32072195 - 32072273
Alignment:
Q  146 gatggtgtttggcaagttatgtacactctctttgatagaattttttatgagagtgagtgtcaattgccagagagatgtg 224  Q
    |||||||||||| |||| |  ||||||||||||||||||  |||| |||||||||| |||||||||||| |||||||||    
T  32072195 gatggtgtttggaaagtgacatacactctctttgatagagattttgatgagagtgaatgtcaattgccaaagagatgtg 32072273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 32064915 - 32064947
Alignment:
Q  192 atgagagtgagtgtcaattgccagagagatgtg 224  Q
    |||||||||||||||||||||||||||||||||    
T  32064915 atgagagtgagtgtcaattgccagagagatgtg 32064947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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