View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_8 (Length: 534)
Name: NF1433_low_8
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 192 - 532
Target Start/End: Original strand, 25944917 - 25945249
Alignment:
| Q |
192 |
acatgaatatgataatttaattatttaacaacaaccttttgtttcttgtctattgaatgcttgatgtacttgaaataagagcatttggcannnnnnnnnn |
291 |
Q |
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| T |
25944917 |
acatgaatatgataatttaattatttaacaacaaccttttgtttcttgtctattgaatgcttgatgtacttgaaataagagcatttggcatttttttttt |
25945016 |
T |
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| Q |
292 |
nnnnnnnnatcttaactaattccgtgctttttggattgaagtagacgcccaacactttgaagaagctttatctaacaggagcatcattcatatctgcaat |
391 |
Q |
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| T |
25945017 |
--------atcttaactaattccgtgctttttggattgaagtagacgcccaacactttgaagaagctttatctaacaggagcatcattcatatctgcaat |
25945108 |
T |
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| Q |
392 |
aattgtatttggcgggcttattgcaccaacggtaannnnnnnnnnnnnaatctatgccaaataatcaacctaaatgacacaagtgtccattaatgcatcc |
491 |
Q |
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| T |
25945109 |
aattgtatttggcgggcttattgcaccaacggtaattttttcttttttaatctatgccaaataatcaacctaaatgacacgagtgtcgattaatgcatcc |
25945208 |
T |
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| Q |
492 |
tattattgtctctatttatcataggaatctgacatcctttg |
532 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25945209 |
tattattgtctctatttgtcataggaatctgacatcctttg |
25945249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 25944635 - 25944825
Alignment:
| Q |
1 |
aatgactaatgggaaatgaatatggcaggtaaggagattgcgtgtgcagcagcggctaagaagtatacaaagagctttcagtgaagagggagaggaagat |
100 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25944635 |
aatgactaacgagaaatgaatatggcaggtaaggagattgcgtgtgcagcagcggctaagaagtatacaaagagctttcagtgaagagggagaggaagat |
25944734 |
T |
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| Q |
101 |
gcaaatgagatgccagaaattccatcatctattccttttcttcctcatgtggtgagtttcaaaaccttgttttgtttgggctatagatgtt |
191 |
Q |
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| T |
25944735 |
gcaaatgagatgccagaaattccatcatctattccttttcttcctcatgtggtgagtttcaaaaccttgttttgtttgggctatagatgtt |
25944825 |
T |
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