View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_81 (Length: 235)
Name: NF1433_low_81
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_81 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 210
Target Start/End: Complemental strand, 21579742 - 21579553
Alignment:
| Q |
21 |
tctgatatcatgattaaggatgttcaagttaatgattcttcagtgattattagagagagtggtatagttgtagttttttctggtgctactgttgatttga |
120 |
Q |
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| T |
21579742 |
tctgatatcatgattaaggatgttcaagttaatgattcttcagtgattattagagagagtggtatagttgtggttttttctgctgctactgttgatttga |
21579643 |
T |
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| Q |
121 |
gtatgaagtggaaatatactgtaagctcttggttgattccttttgggatttctggtagtgggactgcttcaattaaggtatgaatttgaa |
210 |
Q |
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| T |
21579642 |
gtatgaagtggaagtatactgtgagctcttggttgattccttttgggatttctggtagtgggactgcttcaattaaggtatgaagttgaa |
21579553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 21576125 - 21575942
Alignment:
| Q |
21 |
tctgatatcatgattaaggatgttcaagttaatgattcttcagtgattattagagagagtggtatagttgtagttttttctggtgctactgttgatttga |
120 |
Q |
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| T |
21576125 |
tctgatatcatgattaaggatgttcaagttaatacttcgaatattatgattggagagagtggtattgttgtagttgttactggtgctattgttgatttga |
21576026 |
T |
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| Q |
121 |
gtatgaagtggaaatatactgtaagctcttggttgattccttttgggatttctggtagtgggactgcttcaattaaggtatgaa |
204 |
Q |
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| T |
21576025 |
gtatgaagtggaagtatactgtcagttcttggttgcttccttttgggatttctgatagtgggactgcttcaattaaggtatgaa |
21575942 |
T |
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