View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1433_low_82 (Length: 235)

Name: NF1433_low_82
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1433_low_82
NF1433_low_82
[»] chr2 (23 HSPs)
chr2 (38-218)||(10348622-10348802)
chr2 (18-211)||(10372708-10372901)
chr2 (63-211)||(10336637-10336782)
chr2 (31-211)||(10353971-10354149)
chr2 (66-218)||(9316844-9316999)
chr2 (23-218)||(7114785-7114975)
chr2 (62-218)||(9060269-9060428)
chr2 (63-216)||(9283349-9283502)
chr2 (108-218)||(9329418-9329528)
chr2 (87-218)||(9357935-9358066)
chr2 (102-217)||(12018128-12018243)
chr2 (108-218)||(9321810-9321920)
chr2 (103-218)||(9292747-9292862)
chr2 (108-218)||(8572722-8572831)
chr2 (105-218)||(9275342-9275455)
chr2 (106-218)||(12005383-12005495)
chr2 (106-217)||(12011811-12011922)
chr2 (138-187)||(9365445-9365494)
chr2 (141-216)||(14551140-14551215)
chr2 (108-217)||(7612716-7612825)
chr2 (106-211)||(11986743-11986848)
chr2 (115-187)||(8578752-8578824)
chr2 (108-216)||(17565334-17565442)
[»] chr4 (2 HSPs)
chr4 (31-211)||(26575705-26575880)
chr4 (141-217)||(561990-562066)
[»] scaffold0667 (1 HSPs)
scaffold0667 (63-210)||(5286-5436)
[»] chr3 (2 HSPs)
chr3 (87-218)||(37463341-37463472)
chr3 (106-182)||(39428733-39428809)
[»] chr8 (1 HSPs)
chr8 (63-211)||(41965897-41966045)
[»] chr1 (4 HSPs)
chr1 (123-211)||(29452586-29452674)
chr1 (123-211)||(29467060-29467148)
chr1 (87-211)||(29424040-29424164)
chr1 (87-211)||(29442558-29442682)
[»] chr5 (1 HSPs)
chr5 (106-216)||(36225571-36225681)


Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 10348802 - 10348622
Alignment:
Q  38 ctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatca 137  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10348802 ctaaaccctagcagaaccttccttctcattccttggaatggcggctgaacttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatca 10348703  T
Q  138 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  10348702 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattccctcaaattcatcaaccttcacctaaaaaat 10348622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 10372901 - 10372708
Alignment:
Q  18 gaagtaagaaacaaaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttct 117  Q
    |||| ||||||  ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||    
T  10372901 gaaggaagaaatgaaaaaccctaagccctagcagaaccttccttctccttctttgcaatggcggctgaacttccgcctgatattctcgccgaagtcttct 10372802  T
Q  118 cccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||    
T  10372801 cccgcttaccggtaaaatcacttctccgattccgatcaacttcaaaatcatttaaatcattaatcgattcccacaaattcatcaaccttcacct 10372708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 10336782 - 10336637
Alignment:
Q  63 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    ||||||||| ||||||||| |   ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10336782 tccttccttacaatggcggat---cttccgccggaaattctctccgaaatcttctcccgtttaccggtaaaatcacttctccgattccgatcaacctcaa 10336686  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  10336685 aatcacttaaatccttaatcgattctcacaaattcatcaaccttcacct 10336637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 10354149 - 10353971
Alignment:
Q  31 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 130  Q
    |||||||||||||||||||||||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||| | ||||||||||||||    
T  10354149 aaaaaccctaaaccctagcagaaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcctttcccgcttaccggt 10354052  T
Q  131 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    || |||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||   |||||||||||||||||||||    
T  10354051 aatatcacttctcagattccgatcaacttcaaaatcatttaaatccctaatcgattccaacaaattcatcaaccttcacct 10353971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 9316999 - 9316844
Alignment:
Q  66 ttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    |||||| |||||||||||||    ||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||    
T  9316999 ttccttccaatggcggctgacggtcttccgccggaaatactcgccgaaatcttctcccacttaccagtaaaatcacttctccgattccgatcaacttcaa 9316900  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 218  Q
    ||||||||||||| ||||| ||||| | ||| ||||||||||||||||| ||||||    
T  9316899 aatcacttaaatctttaatagattctcacaacttcatcaaccttcacctcaaaaat 9316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 7114785 - 7114975
Alignment:
Q  23 aagaaacaaaaaaccctaaaccctagca-gaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccg 121  Q
    |||||||||||||||||||||||||| | ||||||| |  ||||||||    |||||||||||| ||||||||||| || ||  ||||||||||||| ||    
T  7114785 aagaaacaaaaaaccctaaaccctagaacgaaccttgc--ctccttcc----aatggcggctgatcttccgccggaaatactatccgaaatcttctctcg 7114878  T
Q  122 cttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 218  Q
    | |||| |||  ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| || ||||||    
T  7114879 cctaccagtacgatcacttcttcgattccgatcaacttcaaaatcacttaaatccttaatcgattcccacaaattcatcaaccttcatcttaaaaat 7114975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 9060269 - 9060428
Alignment:
Q  62 ctccttccttgcaatggcggctgag---cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacc 158  Q
    |||||||||| |||||||||||||    ||||||||||| || || ||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  9060269 ctccttccttccaatggcggctgatgttcttccgccggaaatacttgccgaaatcttctcccgcttaccggttcaatcacttctccgattccgatcaact 9060368  T
Q  159 tcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaat 218  Q
    ||||||||||||||||||||||||||||| | ||| ||||  |||||| |||| ||||||    
T  9060369 tcaaaatcacttaaatccttaatcgattctcacaacttcactaacctttacctcaaaaat 9060428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 9283349 - 9283502
Alignment:
Q  63 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    ||||||||| |||||||| | || ||||||||||| || || ||||||||||||||| ||||||| || |||||||| ||||||||||||||||| || |    
T  9283349 tccttccttccaatggcgtccgatcttccgccggacatacttgccgaaatcttctcctgcttaccagttaaatcactactccgattccgatcaacttcta 9283448  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaa 216  Q
    ||||||||  |||| |||| ||||| | ||||||||||||||||||||| ||||    
T  9283449 aatcacttcgatccctaatagattctcacaaattcatcaaccttcacctcaaaa 9283502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 9329528 - 9329418
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| ||||  |||||||    
T  9329528 gaaatcctctcccgcttaccggtaaaatcacttctccgattccgttcaacttcaaaatcacttaaatccataatcgattcccacaacttcactaaccttc 9329429  T
Q  208 acctaaaaaat 218  Q
    |||| ||||||    
T  9329428 acctcaaaaat 9329418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 9358066 - 9357935
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || |||||| |||| || | ||||||||| ||||||||||||||||| ||  ||||||| ||||||||||||||||||||||||||||    
T  9358066 cttccgccggaaatactcgccaaaattttgttccgcttaccagtaaaatcacttctccggtttggatcaacttcaaaatcacttaaatccttaatcgatt 9357967  T
Q  187 cactcaaattcatcaaccttcacctaaaaaat 218  Q
    | | ||| ||||| ||||||||||| ||||||    
T  9357966 ctcacaacttcataaaccttcacctcaaaaat 9357935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 12018128 - 12018243
Alignment:
Q  102 ctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatca 201  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||    
T  12018128 ctcgccgaaatcttctcccgcttaccagtaaaatcacttcttcgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcacca 12018227  T
Q  202 accttcacctaaaaaa 217  Q
    | ||||| || |||||    
T  12018228 atcttcaactcaaaaa 12018243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 108 - 218
Target Start/End: Complemental strand, 9321920 - 9321810
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||| |||||||||| | | | |||||||||||||    
T  9321920 gaaatcctctcccgcttaccggtaaaatcacttctccaattccgatcaacttctaaatcacttaaatccataatcgattctcaccacttcatcaaccttc 9321821  T
Q  208 acctaaaaaat 218  Q
    | || ||||||    
T  9321820 atctcaaaaat 9321810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 9292862 - 9292747
Alignment:
Q  103 tcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaa 202  Q
    |||||||||||||||||||| |||| ||||||||||||||| ||||||||||||  |||||||||||||||||| |||||||||| | ||  ||||  ||    
T  9292862 tcgccgaaatcttctcccgcgtaccagtaaaatcacttctcagattccgatcaatttcaaaatcacttaaatccctaatcgattctcacagcttcactaa 9292763  T
Q  203 ccttcacctaaaaaat 218  Q
    ||||||||| ||||||    
T  9292762 ccttcacctcaaaaat 9292747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 8572722 - 8572831
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||  |||||||||| | ||| |||| ||||||||    
T  8572722 gaaatcttctcccgcataccagtaaa-tcacttctccgattccgatcaacttcaaaatcacttaaatctataatcgattcccacaacttcaccaaccttc 8572820  T
Q  208 acctaaaaaat 218  Q
    |||| ||||||    
T  8572821 acctcaaaaat 8572831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 9275455 - 9275342
Alignment:
Q  105 gccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacc 204  Q
    ||||||||||||||||| ||||| ||| ||||||||||| |||||||||||| |||||||||||||||||| || || ||||| | ||| ||||||||||    
T  9275455 gccgaaatcttctcccggttaccagtacaatcacttctctgattccgatcaatctcaaaatcacttaaatcgttgattgattcccacaacttcatcaacc 9275356  T
Q  205 ttcacctaaaaaat 218  Q
    |||| || ||||||    
T  9275355 ttcatctcaaaaat 9275342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 218
Target Start/End: Original strand, 12005383 - 12005495
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    ||||||||||||||||||||||   | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||||||||| | ||| |||| ||||||    
T  12005383 ccgaaatcttctcccgcttacctccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataatcgattctcacaacttcaccaacct 12005482  T
Q  206 tcacctaaaaaat 218  Q
    ||| |||||||||    
T  12005483 tcatctaaaaaat 12005495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 217
Target Start/End: Original strand, 12011811 - 12011922
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| | ||| |||| ||| ||    
T  12011811 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcaaaatcacttaaatccataatcgattctcacaacttcaccaatct 12011910  T
Q  206 tcacctaaaaaa 217  Q
    |||||| |||||    
T  12011911 tcacctcaaaaa 12011922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 9365494 - 9365445
Alignment:
Q  138 cttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 187  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9365494 cttctccgattccgatcaacctcaaaatcacttaaatccataatcgattc 9365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 14551215 - 14551140
Alignment:
Q  141 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaa 216  Q
    |||| |||||||||||| |||||||||||| ||||| |||||||||| | ||| |||||||| |||||||||||||    
T  14551215 ctccaattccgatcaacttcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacctaaaaa 14551140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 7612825 - 7612716
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| |||| |||||||||||| || | || ||||||||||||||||  || ||||| |||||||||||||| ||||| | ||| ||||  |||||||    
T  7612825 gaaatcctctctcgcttaccggtacaaaccctcctccgattccgatcaatttctaaatcgcttaaatccttaattgattcccacaacttcacaaaccttc 7612726  T
Q  208 acctaaaaaa 217  Q
    |||| |||||    
T  7612725 acctcaaaaa 7612716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 11986743 - 11986848
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||||||||||||||||    | ||||||||||||||||||| ||||| ||| |||| ||||||||| |||| ||||| | ||| |||| ||| ||    
T  11986743 ccgaaatcttctcccgcttacatccacaatcacttctccgattccgctcaacttcagaatcgcttaaatccataattgattctcacaacttcaccaatct 11986842  T
Q  206 tcacct 211  Q
    ||||||    
T  11986843 tcacct 11986848  T

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Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 8578752 - 8578824
Alignment:
Q  115 tctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattc 187  Q
    ||||||||||||||||| |||| |||||||||||||||||||  || |||||||||  |||||| || |||||    
T  8578752 tctcccgcttaccggtacaatcccttctccgattccgatcaatttctaaatcacttcgatccttcatagattc 8578824  T

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Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 17565334 - 17565442
Alignment:
Q  108 gaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttc 207  Q
    |||||| |||| |||||||| ||| |||| || |||||| |||||||||| || |||||||||||||  ||||| ||||| |  || |||| ||||||||    
T  17565334 gaaatcctctctcgcttaccagtacaatccctcctccgactccgatcaacgtcgaaatcacttaaatttttaattgattcccataacttcaccaaccttc 17565433  T
Q  208 acctaaaaa 216  Q
    ||| |||||    
T  17565434 acccaaaaa 17565442  T

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Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 211
Target Start/End: Complemental strand, 26575880 - 26575705
Alignment:
Q  31 aaaaaccctaaaccctagcagaaccttccttctccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggt 130  Q
    ||||||||||||||||||   ||||||| |||  ||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||    
T  26575880 aaaaaccctaaaccctag---aaccttcattc--cttccttacaatggcggctgaacttccaccggaaattctcaccgaaatcttctcccgtttaccggt 26575786  T
Q  131 aaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    || |||||||||||||||||||||||| |||||||||||||||| ||||||||||||   |||||||||||||||||||||    
T  26575785 aatatcacttctccgattccgatcaacttcaaaatcacttaaattcttaatcgattcctacaaattcatcaaccttcacct 26575705  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 562066 - 561990
Alignment:
Q  141 ctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacctaaaaaa 217  Q
    ||||||||||||| ||  |||||||  ||||||||| |||||||||| | ||| ||||  ||||||||||| |||||    
T  562066 ctccgattccgattaagttcaaaatggcttaaatccataatcgattcccacaacttcactaaccttcacctcaaaaa 561990  T

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Target: scaffold0667 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 5436 - 5286
Alignment:
Q  63 tccttccttgcaatggcggctgagc---ttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacct 159  Q
    ||||||||| |||||||| |||| |   |||||||||| |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5436 tccttccttccaatggcgtctgaccgccttccgccggacacactcgcagaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaactt 5337  T
Q  160 caaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacc 210  Q
    ||||||||||||||||| |||||||||| | ||| ||||||||||||||||    
T  5336 caaaatcacttaaatccataatcgattctcacaacttcatcaaccttcacc 5286  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 37463472 - 37463341
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || |||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  37463472 cttccgccggaaatactcgccgaaatcctctcccgtttaccagtagaatcacttctccgattccgatcaacttcaaaatcacttaaatctttaatcgatt 37463373  T
Q  187 cactcaaattcatcaaccttcacctaaaaaat 218  Q
    | | ||| |||||||||||||| || ||||||    
T  37463372 ctcacaacttcatcaaccttcatctcaaaaat 37463341  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 39428809 - 39428733
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatc 182  Q
    |||||||| ||||||||||||||||  |||| || |||| |||||||||||| ||||||| | ||||||||||||||    
T  39428809 ccgaaatcctctcccgcttaccggtgcaatccctcctccaattccgatcaacttcaaaatgagttaaatccttaatc 39428733  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 211
Target Start/End: Original strand, 41965897 - 41966045
Alignment:
Q  63 tccttccttgcaatggcggctgagcttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaa 162  Q
    ||||||||  ||||| ||| ||| || ||||| || || ||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||| |    
T  41965897 tccttcctcacaatgacggttgatctaccgccagaaatactcgctgaaatcttctccctattaccggtaaaatcagttctccgattccgatcaacctcga 41965996  T
Q  163 aatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    ||||||||  ||||||||||||||| | ||| |||||||||||||||||    
T  41965997 aatcacttcgatccttaatcgattcccacaacttcatcaaccttcacct 41966045  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 29452586 - 29452674
Alignment:
Q  123 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||    
T  29452586 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattctcacaacttcatcaaacttcacct 29452674  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 29467060 - 29467148
Alignment:
Q  123 ttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaaccttcacct 211  Q
    ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||| |||||||||| | ||| |||||||| ||||||||    
T  29467060 ttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatccctaatcgattcccacaacttcatcaaacttcacct 29467148  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 29424164 - 29424040
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || ||| ||| |||| |||| |  ||||||||| |||| || ||||||||||| |||||||||||||||||| ||||  |||||||||    
T  29424164 cttccgccggagatactcaccggaatcctctctctgttaccggtacaatccctcctccgattccgttcaacctcaaaatcacttcaatctctaatcgatt 29424065  T
Q  187 cactcaaattcatcaaccttcacct 211  Q
    | | ||  |||||||| ||||||||    
T  29424064 cccacagcttcatcaagcttcacct 29424040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 29442558 - 29442682
Alignment:
Q  87 cttccgccggatattctcgccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgatt 186  Q
    ||||||||||| || ||  ||| |||| |||| |  ||||||| | |||| || ||||||||||| ||||| || ||||||||| ||||| |||||||||    
T  29442558 cttccgccggagatacttaccggaatcctctctctgttaccggcacaatccctcctccgattccgttcaacgtcgaaatcacttcaatccctaatcgatt 29442657  T
Q  187 cactcaaattcatcaaccttcacct 211  Q
    | |  || |||||||| ||||||||    
T  29442658 cccataacttcatcaaacttcacct 29442682  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 36225681 - 36225571
Alignment:
Q  106 ccgaaatcttctcccgcttaccggtaaaatcacttctccgattccgatcaacctcaaaatcacttaaatccttaatcgattcactcaaattcatcaacct 205  Q
    |||||||| ||||||||||||  ||  |||| || ||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| ||||  || ||    
T  36225681 ccgaaatcctctcccgcttactagtgcaatccctcctccgattccgatcaacttcaaaatcacttaaatcgttaatcgattcgcacaacttcactaatct 36225582  T
Q  206 tcacctaaaaa 216  Q
    |||||| ||||    
T  36225581 tcacctcaaaa 36225571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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