View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_88 (Length: 227)
Name: NF1433_low_88
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_88 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 46031647 - 46031855
Alignment:
| Q |
1 |
caacattaatgtcaaaagtatcaaacaaccaaataaagaatcataataccacacataatatttcaaacaatagtatattttcttacctctcttaatgaag |
100 |
Q |
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| T |
46031647 |
caacattaatgtcaaaagtatcaaacaaccaaataaagaatcataataccacacataatatttcaaacaatagtatattttcttacctctcttaatgaag |
46031746 |
T |
|
| Q |
101 |
cttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatccctttcag |
200 |
Q |
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| T |
46031747 |
cttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctgatgccaacagcttgtcaagtggaccatttttacgtatccctttcag |
46031846 |
T |
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| Q |
201 |
acgccatac |
209 |
Q |
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||||||||| |
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| T |
46031847 |
acgccatac |
46031855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 46019065 - 46019219
Alignment:
| Q |
55 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
154 |
Q |
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|||||||||||||||| ||||||||||||||| | |||||||||| ||||||| ||||| ||| |||||||||||||| ||||||||||||||| |
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| T |
46019065 |
ataatatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaaatccttaatagtgtgtattccatcca |
46019164 |
T |
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| Q |
155 |
atgccaacagcttgtcaagtggaccatttttacgtatccctttcagacgccatac |
209 |
Q |
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| T |
46019165 |
aggccaactgcttgtcaagtgttccatctctacgtattcctctcagacgccatac |
46019219 |
T |
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