View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_91 (Length: 221)
Name: NF1433_low_91
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 20593351 - 20593161
Alignment:
| Q |
27 |
atagaagaggaagacgaacaaaagaacgttctatcttcattgtgcggaagcagagcaag-------------tgaaccatctaagattgacaccaccatg |
113 |
Q |
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| T |
20593351 |
atagaagaggaagacgaacaaaacaacgttctatcttcattgtgcggaagcagagcaagattcacttgctcttataccatctaagattgacatcaccatg |
20593252 |
T |
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| Q |
114 |
gaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattaattaattgatgaaaacggttacaagagtagcttat |
204 |
Q |
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| T |
20593251 |
gaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattgattaattgatgaaaacagttacaagagtagcttat |
20593161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 96 - 204
Target Start/End: Complemental strand, 20606150 - 20606042
Alignment:
| Q |
96 |
aagattgacaccaccatggaaatcaccatggataaagcttgaagctctagaaaaagaagagagagaatgtattaattaattgatgaaaacggttacaaga |
195 |
Q |
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| T |
20606150 |
aagattgaaaccgccatggaaatcaccatggataaagcttgaagctctagaaaaagaagagaaagaatgtattgattaattgatgaaaacggttacaaga |
20606051 |
T |
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| Q |
196 |
gtagcttat |
204 |
Q |
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| T |
20606050 |
gtagcttat |
20606042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 17537657 - 17537752
Alignment:
| Q |
109 |
ccatggaaatcaccatggataaagcttgaagctctagaaaa-agaagagagagaatgtattaattaattgatgaaaacggttacaagagtagcttat |
204 |
Q |
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| T |
17537657 |
ccatggaaatcaccatggataaagcttgaagctctagaaaagaggagagaga-aatgtattgattaattgtggaaaacggttacaagagtatcttat |
17537752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 5155248 - 5155392
Alignment:
| Q |
18 |
agaagaggaatagaagaggaagacgaacaaaagaacgttctatcttcattgtgcggaagcagagcaag------------tga-accatctaagattgac |
104 |
Q |
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| T |
5155248 |
agaagaagaatagaaggggaagatgaacaaaacaacattttatcttcattgtgcggaagcagagcaagatgcgcttgctctgataccatctaagattgaa |
5155347 |
T |
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| Q |
105 |
accaccatggaaatcaccatggataaagcttgaagctctagaaaa |
149 |
Q |
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| T |
5155348 |
accgccatggaaaccaccatggataaagcttgaagctctagaaaa |
5155392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 5155401 - 5155433
Alignment:
| Q |
172 |
taattgatgaaaacggttacaagagtagcttat |
204 |
Q |
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| T |
5155401 |
taattgatgaaaacggttacaagagtagcttat |
5155433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Original strand, 31234615 - 31234649
Alignment:
| Q |
51 |
aacgttctatcttcattgtgcggaagcagagcaag |
85 |
Q |
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| T |
31234615 |
aacgttcaatcttcattgtgcggaagcagagcaag |
31234649 |
T |
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