View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_92 (Length: 221)
Name: NF1433_low_92
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_92 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13228020 - 13227800
Alignment:
| Q |
1 |
tcgttatatatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattcc |
100 |
Q |
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| T |
13228020 |
tcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattcc |
13227921 |
T |
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| Q |
101 |
gattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatg |
200 |
Q |
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| T |
13227920 |
gattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagaccctgctcatggattaacgaaaatg |
13227821 |
T |
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| Q |
201 |
tgcagaagctctatttgcctc |
221 |
Q |
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|||| |||||||||||||||| |
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| T |
13227820 |
tgcaaaagctctatttgcctc |
13227800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 103 - 221
Target Start/End: Original strand, 53883670 - 53883782
Alignment:
| Q |
103 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
202 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
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| Q |
203 |
cagaagctctatttgcctc |
221 |
Q |
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| T |
53883764 |
caaaagatctatttgcctc |
53883782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 3 - 199
Target Start/End: Complemental strand, 47522804 - 47522608
Alignment:
| Q |
3 |
gttatatatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccga |
102 |
Q |
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| T |
47522804 |
gttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataaatatatcgattaattccga |
47522705 |
T |
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| Q |
103 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaat |
199 |
Q |
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| T |
47522704 |
ttctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatcctactcatggattaacgaaaat |
47522608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 42680336 - 42680135
Alignment:
| Q |
11 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
110 |
Q |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
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| Q |
111 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
210 |
Q |
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| T |
42680236 |
ctattgattcttttccaa------ttatgtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
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| Q |
211 |
ctatttgc |
218 |
Q |
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| T |
42680142 |
ctatttgc |
42680135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
11 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
109 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
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| Q |
110 |
tctattgattcttttccaattat |
132 |
Q |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 221
Target Start/End: Complemental strand, 192063 - 192013
Alignment:
| Q |
171 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctc |
221 |
Q |
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| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctc |
192013 |
T |
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