View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1433_low_94 (Length: 215)
Name: NF1433_low_94
Description: NF1433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1433_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 12640963 - 12640790
Alignment:
| Q |
26 |
ttcttagggattctataagggatactgtaaagagagagtatccggtgaaggcaatggtggagatatgaggcttattggtcaagtcattaatccaagggta |
125 |
Q |
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| T |
12640963 |
ttcttaaggattctatgagggatactgtaaagaggaagaatggggtgaaggcaatggtggagatatgaggcttattggccaagtcattaatccaagggta |
12640864 |
T |
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| Q |
126 |
tacacagtcggcaatgatgtagtcaggttcatccttctccacaaattctctaatgggttcatggaggagcattg |
199 |
Q |
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| T |
12640863 |
tacacagtcggcaatgatgtagtcaggttgatccttctccacgaattctctaatgggttcatggaggagcattg |
12640790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 12589660 - 12589485
Alignment:
| Q |
20 |
ggtttcttcttagggattctataagggatactgtaaagagagagtatccggtgaaggcaatggtggagatatgaggcttattggtcaagtcattaatcca |
119 |
Q |
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| T |
12589660 |
ggtttgttctaagggattccaaaagagagactgtaaagagggagaaaacggtgaaggcgaggatggggatttgaagcttatgggccatgtcataaacccc |
12589561 |
T |
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| Q |
120 |
agggtatacacagtcggcaatgatgtagtcaggttcatccttctccacaaattctctaatgggttcatggaggagc |
195 |
Q |
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| T |
12589560 |
tgggtatatgcaatcggcaatgatgtagtcaggtggatccttctgcatcaaatccccaatgggttcaaggaggagc |
12589485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 48962979 - 48963125
Alignment:
| Q |
20 |
ggtttcttcttagggattctataagggatactgtaaagagagagtatccggtgaaggcaatggtggagatatgaggcttattggtcaagtcattaatcca |
119 |
Q |
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| T |
48962979 |
ggtttattctaagggattccatgagggagacagtaaatatggagaaaccagtgaaggcaatggtggggatctgaagcttatgacccaagtcataaaccca |
48963078 |
T |
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| Q |
120 |
agggtatacacagtcggcaatgatgtagtcaggttcatccttctcca |
166 |
Q |
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| T |
48963079 |
tgggtatatacagtcggtgatgatgcagtcaggtggatccttctcca |
48963125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 48958832 - 48959017
Alignment:
| Q |
14 |
atgaacggtttcttcttagggattctataagggatactgtaaagagagagtatccggtgaaggcaatggtggagatatgaggcttattggtcaagtcatt |
113 |
Q |
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| T |
48958832 |
atgaagggtttattctaagggattccatgagggagacggtaaagagggagaaaccagtgaaggcgatggtgggaatttgaagcttatgggccaagtcata |
48958931 |
T |
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| Q |
114 |
aatccaagggtatacacagtcggcaatgatgtagtcaggttcatccttctccacaaattctctaatgggttcatggaggagcattg |
199 |
Q |
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| T |
48958932 |
aacccaggggtttatgcagtcagcgattatgcagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattg |
48959017 |
T |
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