View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_1 (Length: 651)
Name: NF14340_high_1
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_1 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: scaffold0039 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 21 - 639
Target Start/End: Complemental strand, 110174 - 109556
Alignment:
| Q |
21 |
atagatacggagaactagcaacataagaccgaatttagttatatgaggaggatcatatggtttccaaatttttcctccaccagattgcaacacattcacc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
110174 |
atagatacggagaactagcaacataagaccgaatttcgttatatgaggaggataatatggtttccaaatttttcctccaccagattgcaacacattcacc |
110075 |
T |
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| Q |
121 |
tacgtgcatgatgaagaggagaagtctgtaaggatgcaggttggttaaaaacgtgaatttgtgagaactttgaataaaagacaagtctactgatagctac |
220 |
Q |
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| T |
110074 |
tacgtgcatgatgaagaggagaagtctgtaaggatgaaggttggttaaaaacgtgaatttgtgagaactttgaataaa-gacaagtctactgatagctac |
109976 |
T |
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| Q |
221 |
acaactctttctttacttaattcttgatgtttattctcttgattcaacattacacaaagaacaaacggnnnnnnngacaatgtgaatgtagacttctttt |
320 |
Q |
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| T |
109975 |
acaactctttctttacttaattcttgatgtttattctcttgattcaacattacacaaagaacaaacggaaaaaaagacaatgtgaatgtagacttctttt |
109876 |
T |
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| Q |
321 |
ggaatattcttcctttgggaagcgcgtttgggatggaaaa-tgcatttgcaaaaagttctgttgggttggagaagcatgttcgcaaatttgatttgcatg |
419 |
Q |
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| T |
109875 |
ggaatattcttcctttgggaagcgcgtttgggatggaaaaatgcatttgcaaaaagttctgttgggttggagaagcatgttcgcaaatttgatttgcatg |
109776 |
T |
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| Q |
420 |
gtaatgttgcagaattgctttgcagaagtgcatttggagaagcatttttcaataatcacgtttgcagattcttgtatgcaaaagtgcgttttgaataagt |
519 |
Q |
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| T |
109775 |
gtaatgttgcagaattgctttgcagaagtgcatttggagaagcatttttcaataatcacgtttgcagattcttgtatgcaaaagtgcgttttgaataagt |
109676 |
T |
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| Q |
520 |
tgatttggctcagttgcggtttggataatctgattggtttggaaaagcaatttgatcaatttgtggaggtaacgcacgtttgtatctcagcttctcaata |
619 |
Q |
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| T |
109675 |
tgatttggttcagttgcggtttggataatctgattggtttggaaaagcaatttgatcaatttgtggaggtaacgcacgtttgtatctcagcttctcaata |
109576 |
T |
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| Q |
620 |
gcacgtggactttgatattg |
639 |
Q |
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| T |
109575 |
gcacgtggactttgatattg |
109556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 339 - 482
Target Start/End: Original strand, 39202863 - 39203007
Alignment:
| Q |
339 |
gaagcgcgtttgggatggaaaat-gcatttgcaaaaagttctgttgggttggagaagcatgttcgcaaatttgatttgcatggtaatgttgcagaattgc |
437 |
Q |
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| T |
39202863 |
gaagcgtgtttgggatggaaaagcgcgattgtagaaagttcgtttgggttggagaagcacgttcgctgatttgctttgaatgataatgttgcagaattgc |
39202962 |
T |
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| Q |
438 |
tttgcagaagtgcatttggagaagcatttttcaataatcacgttt |
482 |
Q |
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| T |
39202963 |
tttgcagatgcgcatctggagaagcattttccaacaatcacgttt |
39203007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 341 - 467
Target Start/End: Complemental strand, 39165969 - 39165842
Alignment:
| Q |
341 |
agcgcgtttgggatggaaaatgcat--ttgcaaaaagttctgttgggttggagaagcatgttcgcaaatttgatttgcatggtaatgttgcagaattgct |
438 |
Q |
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| T |
39165969 |
agcgcgtttgggatggaaaa-gcacgattgtagaaagttcgtttgggttgaagaagcatgttcactgatttgctttgaatggtaatgttgcagaattgct |
39165871 |
T |
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| Q |
439 |
ttgcagaagtgcatttggagaagcatttt |
467 |
Q |
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| T |
39165870 |
ttgcagaagcgtgtttggagaagcatttt |
39165842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 45614392 - 45614434
Alignment:
| Q |
80 |
gtttccaaatttttcctccaccagattgcaacacattcaccta |
122 |
Q |
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| T |
45614392 |
gtttcaaaatttggcctccaccagattgcaacacattcaccta |
45614434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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