View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_12 (Length: 379)
Name: NF14340_high_12
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_12 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 28 - 368
Target Start/End: Complemental strand, 37568 - 37227
Alignment:
| Q |
28 |
aaagttgttaatgtgaaaaatctcaggagaagtaatagatgtagaaaactcaaatgtgttgaactaaagggtcctggaagtgcagttgaggaaccattgg |
127 |
Q |
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| T |
37568 |
aaagttgttaacgtgaaaaatcttaggagaagtaatagatgtagaaaactcagatgtgttcaactaaagggtcctggtagtgcagttgatgaaccattgg |
37469 |
T |
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| Q |
128 |
tcattgaagatgcacttgagtcaggcccatcaaagaggcctagaagagattttcaatttgctacttgcactaaaactacaaacaatgtaagtgtaaatat |
227 |
Q |
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| T |
37468 |
tcattgaagatgcacttgagtcagacccatcaaagaggcctagaagagattttcaatttgctacttgcactaaaactacaaacaatgtaagtgtaaacat |
37369 |
T |
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| Q |
228 |
tttcaagcactattaggattgcatagattttgatattaggattgaa-tttctttttgatattgactctgactgctgcaaattcaattggtcatactcagg |
326 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37368 |
tttcaatagatattaggattgcatagattttgatattaggattgaattttctttttgatattgactctgactgctgcaaattcaattgatcatactcagg |
37269 |
T |
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| Q |
327 |
aaagcataagtggtccaaaggaagcaactcagaacataagtg |
368 |
Q |
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| T |
37268 |
aaagcataagtggtccaaaggaagcaactcagaacataagtg |
37227 |
T |
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