View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_13 (Length: 372)
Name: NF14340_high_13
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 211 - 362
Target Start/End: Original strand, 4821540 - 4821691
Alignment:
| Q |
211 |
gtataggcccttcttttatcatgtacaaataaacacaaaaacgagtgcctccaactttaacataatttacactaatctataaaaaggacacaatcaacta |
310 |
Q |
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| T |
4821540 |
gtataggcccttcttttatcatgtacaaataaacacaaaaacgagtgcctccaactttgtcataatttacactaatctataaaaaggacacaatcaacta |
4821639 |
T |
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| Q |
311 |
aatttaaagtcccaatctttcccctctaaaatatcatctcatctcttctctg |
362 |
Q |
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| T |
4821640 |
aatttaaagtcccaatctttcccctctaaaatatcatctcatctcttctctg |
4821691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 4821346 - 4821483
Alignment:
| Q |
18 |
cacactgtgctcaccttcatgaacatattagtggctacaaagtttataatcttaattatgtgtcaaagtacatgttagtgtaggccc--nnnnnnnnnca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4821346 |
cacactgtgctcaccttcatgaacatattagtggctacaaagtttataatcttaattatgtgtcaaagtacatgttagtgtaggcccttcttttttttca |
4821445 |
T |
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| Q |
116 |
tgtagaaattcctcaaacagtcaccaatctctaattgt |
153 |
Q |
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| T |
4821446 |
tgtagaaattcctcaaacagtcaccaatctctaattgt |
4821483 |
T |
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