View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_18 (Length: 325)
Name: NF14340_high_18
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 54605913 - 54606209
Alignment:
| Q |
14 |
caaaggccacaatttactagcatgcttaaatttcctgtcatagttacttatggtgcgtgtaaataaataattggctcaaattcactaggtaagttaaata |
113 |
Q |
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| T |
54605913 |
caaaggccacaatttactagcatgcttaaattccctgtcatagttacttatggtgcgtgtaaataaataattggctcaaattcactagcctagctaaata |
54606012 |
T |
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| Q |
114 |
actggctttagttacccaagaacaattcataaaaatgaccaggaaattgactaattctttaactcattcaaaggttacttgtcatatgcaatgaaagaaa |
213 |
Q |
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| T |
54606013 |
aatggctttagttacccaagaacaattcataaaaatgaccaagaaattggctaattctttaactcattcaaaggttacttgtcatatggaatgaaagaaa |
54606112 |
T |
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| Q |
214 |
ga----ctaattcgttaacatggctatggtataacaagttactatctacaattgaaactagtgacgcattgaagcaccacaaactgcaaggtctaca |
306 |
Q |
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| T |
54606113 |
gactagctaattcgttaacatggctatggtataacaagttactatctacaattgaaactagtgacgcattgaagcaccacaaactgcaaggtctaca |
54606209 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 34386501 - 34386447
Alignment:
| Q |
229 |
atggctatggtataacaag-ttactatctacaattgaaactagtgacgcattgaa |
282 |
Q |
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| T |
34386501 |
atggctatggtataacaaggttactatccacaattgaaactagtgacacattgaa |
34386447 |
T |
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