View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14340_high_23 (Length: 283)
Name: NF14340_high_23
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 21074172 - 21073909
Alignment:
| Q |
16 |
caaatccttctcttgacccatgatgtccaatccat-ctggcattttcccttnnnnnnnnctatggcatttttctcttcaattgaaaagacaaaa------ |
108 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21074172 |
caaatcattctcttggcccatgatgtccaatccattctggcattttcccttaaaaaaaactatggcatttttctcttcaattgaaaagccaaaaacgtag |
21074073 |
T |
|
| Q |
109 |
------------taattttctctatatacggaactatgttttgatttgttgatttcaatttgtttgatttgctaatttcagttgtgtattgttctccggt |
196 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21074072 |
ttgaaaagacaataattttctctatgtacggaactatgttttgatttgttgatttcaatttgtttgatttgctaatttcagttgtgtattattctccggt |
21073973 |
T |
|
| Q |
197 |
gttattattgttgtttcatgcgcttttagtttgctagtttgttctcatgttatgtattcatatt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21073972 |
gttattattgttgtttcatgcgcttttagtttgctagtttgttctcatgttatgtattcatatt |
21073909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 135 - 255
Target Start/End: Original strand, 21035315 - 21035436
Alignment:
| Q |
135 |
ttttgatttgttgatttcaatttgtttgatttgctaatttcagttgtgtattgttctccggtgttattattgttgtt-tcatgcgcttttagtttgctag |
233 |
Q |
| |
|
|||||||||||||||||| ||| ||| | ||||| ||||| |||||||||||||||| ||| ||||||||| || ||| || ||||| |||||| |
|
|
| T |
21035315 |
ttttgatttgttgatttcggtttatttaacttgctgatttcggttgtgtattgttctcaggttcaattattgttcttctcaggcacttttgctttgctga |
21035414 |
T |
|
| Q |
234 |
tttgttctcatgttatgtattc |
255 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21035415 |
tttgttctcatgttatgtattc |
21035436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 108
Target Start/End: Original strand, 21035242 - 21035270
Alignment:
| Q |
80 |
catttttctcttcaattgaaaagacaaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21035242 |
catttttctcttcaattgaaaagacaaaa |
21035270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 41763332 - 41763436
Alignment:
| Q |
93 |
aattgaaaagacaaaataattttctctatatacggaactatgttttgatttgttgatttcaatttgtttgatttgctaatttcagttgtgtattgttctc |
192 |
Q |
| |
|
|||||||||| ||||| | |||||||||| ||||| || || ||||||||||||||||| ||||||||||||| | ||||| || |||||| ||||| |
|
|
| T |
41763332 |
aattgaaaagccaaaacagttttctctatttacggtacaattttttgatttgttgatttaggtttgtttgatttgttgatttcgattatgtattattctc |
41763431 |
T |
|
| Q |
193 |
cggtg |
197 |
Q |
| |
|
|||| |
|
|
| T |
41763432 |
gggtg |
41763436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University