View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_29 (Length: 236)
Name: NF14340_high_29
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 34980540 - 34980721
Alignment:
| Q |
20 |
gttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggtt |
119 |
Q |
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| T |
34980540 |
gttaagatggttgaagttggagatcttgaaactatacctagttttgatttgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggacaaggtt |
34980639 |
T |
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| Q |
120 |
ttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
201 |
Q |
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| T |
34980640 |
ttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtggcaag |
34980721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 34984987 - 34985164
Alignment:
| Q |
20 |
gttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggtt |
119 |
Q |
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|||||| |||||||||||||||| ||| ||||| ||||||||||||||| ||||||||| |||||| |||||| |||| ||||||||||| ||||||| |
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| T |
34984987 |
gttaagttggttgaagttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaattcaatgtatacaatggaagtttttgaacaaggtt |
34985086 |
T |
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| Q |
120 |
ttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
197 |
Q |
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| T |
34985087 |
tgcagattgaagcttctcgggacaaggcattgattaagataagtccaactaaactagttgaattacttatggatgtgg |
34985164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 34992942 - 34993115
Alignment:
| Q |
20 |
gttaagatggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggtt |
119 |
Q |
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| T |
34992942 |
gttaagatggttgaagttggagatcttcaaacactgcctagttttgattcgtgtcgaatccaagatccaatgtcaacaaaggacgtttttggacaaggtt |
34993041 |
T |
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| Q |
120 |
ttccgattgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggat |
193 |
Q |
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| T |
34993042 |
tgcagattgaaggttcacgggatatggcattgattaagataagtccaactaaactagttgaagtacttatggat |
34993115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 27542652 - 27542482
Alignment:
| Q |
27 |
tggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgat |
126 |
Q |
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| T |
27542652 |
tggttgaagttggagaattttaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatgaaagtttttggacaaggtttgcagat |
27542553 |
T |
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| Q |
127 |
tgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
197 |
Q |
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|||||||| |||| |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
27542552 |
tgaagcttttcggaacatggcattgattaagataagtccaactaaactagttgaaatacttatggatgtgg |
27542482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 27581543 - 27581375
Alignment:
| Q |
27 |
tggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgat |
126 |
Q |
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| T |
27581543 |
tggttgaagttggagagcttcaaactttacctagttttgatttgtga--aaatcaaaatccaatgtacacaatggaagtttctggacaaggtttatagat |
27581446 |
T |
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| Q |
127 |
tgaagcttctcgggacatggaattgattaagataagaccaactaaactagttgaattacttatggatgtgg |
197 |
Q |
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| T |
27581445 |
tgaagcctcgtgggacatggcattggttaagataattccaactaaactagttgaattacttatggatgtgg |
27581375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 27583061 - 27583233
Alignment:
| Q |
27 |
tggttgaagttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgat |
126 |
Q |
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|||||| ||||||||| ||| ||||| ||||||||||| ||| ||||||||| ||||||||||||| |||| |||| ||||||| |||||||| ||| |
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| T |
27583061 |
tggttggagttggagagcttcaaactttacctagttttaatttgtgtcgaaaccaaaatccaatgtacacaatggaaatttttggacaaggtttgttgat |
27583160 |
T |
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| Q |
127 |
tgaagcttctcgggacatggaa--ttgattaagataagaccaactaaactagttgaattacttatggatgtgg |
197 |
Q |
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| T |
27583161 |
tgaagcttctcgagacatggcatgttgattaatatatgttcaactaaactagatgaattacttatggatgtgg |
27583233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 27543744 - 27543854
Alignment:
| Q |
34 |
agttggagatcttgaaactatacctagttttgattcgtgtcgaaatcaaaatccaatgtcaacaaaggaagtttttggccaaggttttccgattgaagct |
133 |
Q |
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||||||||| ||| ||||| ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| || ||||| | |||||||||| |
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| T |
27543744 |
agttggagagcttcaaactttacctagttttgatttgtgtcgaaaccaaaatccaatgtacacaatggaagtttttggacatggtttgcagattgaagct |
27543843 |
T |
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| Q |
134 |
tctcgggacat |
144 |
Q |
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|||| |||||| |
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| T |
27543844 |
tctcaggacat |
27543854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 27543859 - 27543892
Alignment:
| Q |
164 |
ccaactaaactagttgaattacttatggatgtgg |
197 |
Q |
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| T |
27543859 |
ccaactaaactagttgaattacttatggatgtgg |
27543892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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