View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_3 (Length: 498)
Name: NF14340_high_3
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 6 - 255
Target Start/End: Original strand, 4211210 - 4211458
Alignment:
| Q |
6 |
agtgagaagaagaccacacaataaacagaatagcacaagaattaacctcttnnnnnnntagcacaaaaattgatatgtttcccgacatacaaaatttgag |
105 |
Q |
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| T |
4211210 |
agtgacaagaagaccacacaataaacagaatagcacaagaatta-cctcttaaaaaaatagcacaaaaattgatatgtttcccgacatacaaaatatgag |
4211308 |
T |
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| Q |
106 |
ggacaccaatagaaccatttgccagattaagaacactagccactttgtcacttcaacacaattagtgatgtgcaatctgaacacccgaactgaataataa |
205 |
Q |
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| T |
4211309 |
ggacaccaatagaaccatttgccagattaagaacactagccactctgtcacttcaacacaatttgtgatgtgcaatctgaacacccgaactgaataataa |
4211408 |
T |
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| Q |
206 |
acataactttgaagtttttacattttaaaaacttttcactaattggtcat |
255 |
Q |
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| T |
4211409 |
acataactttgaagtttttacattttaaaaacttttcactaattggtcat |
4211458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 298 - 483
Target Start/End: Original strand, 4211507 - 4211692
Alignment:
| Q |
298 |
acaaaacttgtaagttcaacacaatggtagccatatgatttggttgtgtatattttcatcatccaattaaactaatgtcatgtcatatttttgtctaaaa |
397 |
Q |
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| T |
4211507 |
acaaaacttgtaagttcaacacaatggtagccacgtgatttggttgtgtatattctcatcatccaattaaactaatgtcatgtcatatttttgtctaaaa |
4211606 |
T |
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| Q |
398 |
ataaaaacttttcattgataacaataannnnnnnactttcaaaaaattgaatatactacctctaataaattttgaatatactaatt |
483 |
Q |
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| T |
4211607 |
ataaaaacttttcattgataacaataatttttttactttcaaaaaattgaatatactacctctaataaattttgaatatactaatt |
4211692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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