View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_32 (Length: 223)
Name: NF14340_high_32
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 3 - 209
Target Start/End: Original strand, 6185240 - 6185446
Alignment:
| Q |
3 |
ccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtt |
102 |
Q |
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| T |
6185240 |
ccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtt |
6185339 |
T |
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| Q |
103 |
tgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaactgttcgccttcaaccaccgt |
202 |
Q |
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| T |
6185340 |
tgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttcgccttcaaccaccgt |
6185439 |
T |
|
| Q |
203 |
ttcatct |
209 |
Q |
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||||||| |
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| T |
6185440 |
ttcatct |
6185446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 4236119 - 4236321
Alignment:
| Q |
6 |
atatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgt |
105 |
Q |
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||||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
4236119 |
atatcagcttctttcaatgctggtgcatcgtttgttccgtctccggttacagcaactacatgacctttttgttttaagcattgtaccattagaagtttat |
4236218 |
T |
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| Q |
106 |
caaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaactgttcgccttcaaccaccgtttc |
205 |
Q |
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| T |
4236219 |
caaatggagaagatcttgccatcacagagattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttcgccttcaaccactgtttc |
4236318 |
T |
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| Q |
206 |
atc |
208 |
Q |
| |
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||| |
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| T |
4236319 |
atc |
4236321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 38357063 - 38357184
Alignment:
| Q |
6 |
atatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcattgaaccattagaagtttgt |
105 |
Q |
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||||| |||||||| || || |||||||||||||| || || ||||| || ||||||||||||||||| | | |||||||||| ||||| | |||||||| |
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| T |
38357063 |
atatcagcttcttttaaggcaggtgcatcgtttgtgccgtcgcctgtgaccgcaactacatgacctttctttcttaagcattgcaccatcaaaagtttgt |
38357162 |
T |
|
| Q |
106 |
caaatggagatgatcttgccat |
127 |
Q |
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| | || |||||||||||||| |
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| T |
38357163 |
ccataggggatgatcttgccat |
38357184 |
T |
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