View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14340_high_34 (Length: 222)
Name: NF14340_high_34
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 5873689 - 5873498
Alignment:
| Q |
11 |
agaacctgtggagtatgaaaaccattttaagatggtttggattaaattccaggttgaaagtgaatttttcaaaaattagtttggtggagcatgaaactga |
110 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5873689 |
agaacttgtggagtacgaaaaccattttaagatagtttggattaaattccaggttgaaagtgaatttttcaaaaattagtttggtggagcatgaaactga |
5873590 |
T |
|
| Q |
111 |
acnnnnnnnaggaatgtggcgtcctttttaaagagtagaaggggaacaattcttttagtctatcttggtctcccaattggggaaaacccaat |
202 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5873589 |
actttttttaggaatgtggcgtcctttttaaagagtagaaggggaacaattcttttagtctatcttggtctcccaattggggaaaacccaat |
5873498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 5877328 - 5877137
Alignment:
| Q |
17 |
tgtggagtatgaaaaccattttaagatggtttggattaaattccaggttgaaagtgaatttttcaaaaattagtttggt-ggagcatgaaactgaac-nn |
114 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||| || |||||||||||||| ||||||||||| ||||||||| |||| |||||| ||||| |
|
|
| T |
5877328 |
tgtggagtatgcaagccattttaagatggtttgaattaattttcaggttgaaagtgattttttcaaaaagtagtttggtgggagtatgaaagtgaacaat |
5877229 |
T |
|
| Q |
115 |
nnnnnaggaatgtggcgtcctttttaaagagtagaaggggaacaattcttttagtctatcttggtctcccaattggggaaaacccaatgaag |
206 |
Q |
| |
|
|| ||| ||| | ||||||||||||||||||||||| |||| ||| |||||||||||||| || ||||||| |||||||| |||| |
|
|
| T |
5877228 |
tttttagaaataaggcaccttttttaaagagtagaaggggaacgattccttttgtctatcttggtcttccgattggggcaaacccaacgaag |
5877137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University