View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_35 (Length: 221)
Name: NF14340_high_35
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 42224461 - 42224281
Alignment:
| Q |
26 |
tccaggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacac |
125 |
Q |
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| T |
42224461 |
tccaggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacac |
42224362 |
T |
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| Q |
126 |
tgtacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatat |
206 |
Q |
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| T |
42224361 |
tatacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcatat |
42224281 |
T |
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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 36675385 - 36675561
Alignment:
| Q |
28 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactg |
127 |
Q |
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| T |
36675385 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctc |
36675484 |
T |
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| Q |
128 |
tacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcat |
204 |
Q |
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| T |
36675485 |
tacgggttgccaatggtgcaccctcacagtttccttgtggtgaccatcaatggtgcaggatgtgtggttgagatcat |
36675561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 204
Target Start/End: Original strand, 36685467 - 36685643
Alignment:
| Q |
28 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactg |
127 |
Q |
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| T |
36685467 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagccacgttgatgaactgcatggtttggactctc |
36685566 |
T |
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| Q |
128 |
tacggtctgcctatggtgcacccggacagcgtgctcgtggtaaccatcaacggctcaggttgtgtgattgagatcat |
204 |
Q |
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| T |
36685567 |
tacgggttgccaatggtgcaccctcacagtttccttgtggtgaccatcaatggtgcaggatgtgtggttgagatcat |
36685643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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