View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_4 (Length: 489)
Name: NF14340_high_4
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 17 - 326
Target Start/End: Complemental strand, 45547602 - 45547307
Alignment:
| Q |
17 |
agaatttcatttcaaggggtttggtcatgtgtagagaagttatgtagctagcttgtaagggttaactcgatggacatgaaggatagttccattgatccac |
116 |
Q |
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| T |
45547602 |
agaatttcatttcaaggggtttggtcatgtgtagagaagttatgtagct----tgtaagggttaactcgatggacatgaaggatagttccattgatccac |
45547507 |
T |
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| Q |
117 |
cctaatcatcttaatttgtttgtaaaattgataatgcatgttttaggattcaacttcttattttcatttatttaatctaatcaaccacacaaaattatct |
216 |
Q |
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| T |
45547506 |
cctaatcatcttaatttgtttgtaaaattgataatgcatgttttaggattcaacttcttatcttcatttatttaatctaatcaatcataca--------- |
45547416 |
T |
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| Q |
217 |
aaattatttaaatagtttgtaagatctaacttaactgataaagttgatattgttaagtttgacaacttcatccatattaaaacttgaaaccatgtagttg |
316 |
Q |
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| T |
45547415 |
aaattattcaaatagtttgtatgatctaatttaactgataaggttgat-ttgttaagtttgacaactttatccagattaaaacttgaaaccatatagttg |
45547317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 389 - 480
Target Start/End: Complemental strand, 45547186 - 45547095
Alignment:
| Q |
389 |
ttagagtcttgaaaagtaacattttctaactgtaacatgaataacttctaatgtcggcacacacccctaattatcaaatttaatatctgtgc |
480 |
Q |
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| T |
45547186 |
ttagagtcttgaaaagtaacattttctaactgtaacatgaataacttctaatgtcggcacacacccctaattatcaaatttaatatctgtgc |
45547095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 45547279 - 45547214
Alignment:
| Q |
329 |
gtctgcagattaaaaaattattcctataatttatttgtaaaagaatgcttatttttatttttagag |
394 |
Q |
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| T |
45547279 |
gtctgtagataaaaaaattattcatataatttatttgtaaaagaatgcttatttttatttttagag |
45547214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 45552749 - 45552700
Alignment:
| Q |
119 |
taatcatcttaatttgtttgtaaaattgataatgcatgttttaggattca |
168 |
Q |
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| T |
45552749 |
taatcattttaatctgtttgtaaaattgataatacatgttttaggattca |
45552700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 45552576 - 45552542
Alignment:
| Q |
392 |
gagtcttgaaaagtaacattttctaactgtaacat |
426 |
Q |
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| T |
45552576 |
gagtcttgaaaagtaacattttctaactgcaacat |
45552542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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