View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_5 (Length: 486)
Name: NF14340_high_5
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 312 - 476
Target Start/End: Complemental strand, 43171598 - 43171433
Alignment:
| Q |
312 |
cgtgtatatatatctcattgttccaa-taccagaaacctatcacatcacatccatataatttctcaatagtttcctcctgtatttaagcaatggcaacca |
410 |
Q |
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| T |
43171598 |
cgtgtatatatatctcgttgttccaaataccagaaacctatcacatcacatccatataatttctcaatagtttcctcctgtatttaagcaatggcaacca |
43171499 |
T |
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| Q |
411 |
attctcttactttggtgaccattttcatctttgccatggctctttgtaccactttaccttgtgatg |
476 |
Q |
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| T |
43171498 |
attctcttactttggtgaccattttcatctttgccatggctctttgtaccactttaccttttgatg |
43171433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 100 - 314
Target Start/End: Complemental strand, 43171829 - 43171626
Alignment:
| Q |
100 |
ttttttctactaagcaaagaattctttgtgttccttaatatttgtttgnnnnnnnatgaaaaacgaaaagtaaatgaaagtaaggaaacattaactatta |
199 |
Q |
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| T |
43171829 |
ttttttctactaagcaaagcattctttgtgttccttaatatttgtttgtttttttatgaaaaacgaaaagtaaatgagagtaaggaaacattaactatta |
43171730 |
T |
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| Q |
200 |
aagggatatgtaaattacaatagtaccctcacaattaagtagttgttaatatgaaagatttagggttttggtaaaaagcaagtgggagagtaggtttgct |
299 |
Q |
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| T |
43171729 |
aagggatatgtaaattacaatagtaccctcacaat--agta---------ccctcacaattagggttttggtagaaagcaagtgggagagtaggtttgct |
43171641 |
T |
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| Q |
300 |
aacttatttcttcgt |
314 |
Q |
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| T |
43171640 |
aacttatttcttcgt |
43171626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 43172141 - 43172039
Alignment:
| Q |
1 |
cttctacatattaacttctttcaccctttattttattttacaatgagaagcttcccaactgaattttctgaattgcgtttgtacttcttctttgccttct |
100 |
Q |
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| T |
43172141 |
cttctacatattaaattctttcaccctttattttattttacaatgagaagcttcccagctgaattttctgaattgcgtttgtacttcttctttgccttat |
43172042 |
T |
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| Q |
101 |
ttt |
103 |
Q |
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||| |
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| T |
43172041 |
ttt |
43172039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 417 - 476
Target Start/End: Complemental strand, 43161353 - 43161294
Alignment:
| Q |
417 |
ttactttggtgaccattttcatctttgccatggctctttgtaccactttaccttgtgatg |
476 |
Q |
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| T |
43161353 |
ttactttggtgactattttcatctttgctatgactctttctcccactttaccatgtgatg |
43161294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 36260685 - 36260613
Alignment:
| Q |
204 |
gatatgtaaattacaatagtaccctcacaattaagtagttgttaatatgaaagatttagggttttggtaaaaag |
277 |
Q |
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| T |
36260685 |
gatatgtaaagtgcaatagtaccc-catatttaagtagttgttaagaagaaagatttagagttttggtaaaaag |
36260613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 6026973 - 6026904
Alignment:
| Q |
207 |
atgtaaattacaatagtaccctcacaattaagtagttgttaatatgaaagatttagggttttggtaaaaa |
276 |
Q |
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| T |
6026973 |
atgtaaattacactactaccctcatattttagtagttgttaaaatgaaagattagagcttttggtaaaaa |
6026904 |
T |
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