View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14340_high_6 (Length: 455)
Name: NF14340_high_6
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Complemental strand, 51935632 - 51935211
Alignment:
| Q |
16 |
cacagaatcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51935632 |
cacagaatcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgtgagtactaatggaatcacctatctttttcacacaaa |
51935533 |
T |
|
| Q |
116 |
tattttaagccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaannnnnnnacaggtgcatccgaccaacacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51935532 |
tattttaagccgtaccaattaattctttgcaaccttaaaaactagatttagcatgcacaattatacgacaatttttttacaggtgcatccgaccaacacc |
51935433 |
T |
|
| Q |
216 |
tgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51935432 |
tgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcattacatgacttcatcaactagc |
51935333 |
T |
|
| Q |
316 |
atagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51935332 |
atagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctctttagtttaatgcactacctcatgc |
51935233 |
T |
|
| Q |
416 |
cgaagcgcaatattctctccct |
437 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
51935232 |
cgaagcgcaatattctctccct |
51935211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 194 - 435
Target Start/End: Complemental strand, 12996152 - 12995911
Alignment:
| Q |
194 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
293 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
|
|
| T |
12996152 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
12996053 |
T |
|
| Q |
294 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
393 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
|
|
| T |
12996052 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
12995953 |
T |
|
| Q |
394 |
agtttaatgcactacctcatgccgaagcgcaatattctctcc |
435 |
Q |
| |
|
||| | ||||| || |||||||| |||||| | ||||||||| |
|
|
| T |
12995952 |
agtgtcatgcattatctcatgcctaagcgccaaattctctcc |
12995911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 194 - 435
Target Start/End: Complemental strand, 13070805 - 13070564
Alignment:
| Q |
194 |
acaggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactca |
293 |
Q |
| |
|
||||||| |||||||| | ||||||||||| ||| | |||||||| || || ||||||||||||||||| ||| |||| || ||||| ||||| ||||| |
|
|
| T |
13070805 |
acaggtgtatccgacccagtcctgaagagctggagaattttggtactccggacttcactatatacaatgccggaaagtttccatgtaaccgtttcactca |
13070706 |
T |
|
| Q |
294 |
ttacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttt |
393 |
Q |
| |
|
|||||||| || || |||||||| || | |||||| | |||| ||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |
|
|
| T |
13070705 |
ctacatgacatcttccactagcattgatcttaatcttgctagaagggaaatggttatcctcggcacacaatacgccggggaaatgaagaaaggtcttttc |
13070606 |
T |
|
| Q |
394 |
agtttaatgcactacctcatgccgaagcgcaatattctctcc |
435 |
Q |
| |
|
||| | ||||| || |||||||| |||||| | ||||||||| |
|
|
| T |
13070605 |
agtgtcatgcattatctcatgcctaagcgccaaattctctcc |
13070564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 195 - 422
Target Start/End: Complemental strand, 28138193 - 28137966
Alignment:
| Q |
195 |
caggtgcatccgaccaacacctgaagagctagaggaatttggtaccccagatttcactatatacaatgcaggacagttcccttgtaatcgttttactcat |
294 |
Q |
| |
|
||||||||| ||||| || ||| ||||||| ||| | ||||| || |||||||||||||| || ||||||||| ||| || |||||||||| ||| ||| |
|
|
| T |
28138193 |
caggtgcattcgacctactcctaaagagcttgagaattttggcacaccagatttcactatttataatgcaggaaggtttccatgtaatcgttatacacat |
28138094 |
T |
|
| Q |
295 |
tacatgacttcatcaactagcatagacatgaatcttacaagaaaggaaatggtcatccttggcacacaatatgctggagaaatgaagaaaggtctcttta |
394 |
Q |
| |
|
|||||||| || ||||| || | || | |||||| |||| |||||||||||||| ||||| |||||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
28138093 |
tacatgacatcttcaaccagtgttgatcttaatctttcaaggaaggaaatggtcattcttggaacacaatatgctggtgaaatgaagaagggtcttttta |
28137994 |
T |
|
| Q |
395 |
gtttaatgcactacctcatgccgaagcg |
422 |
Q |
| |
|
|| | ||||| || |||||||| ||||| |
|
|
| T |
28137993 |
gtgtcatgcattatctcatgcctaagcg |
28137966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 28138358 - 28138296
Alignment:
| Q |
17 |
acagaatcaaagtccgaatagtatctgcaagagcttatcattctctatttatgcataatatgt |
79 |
Q |
| |
|
|||||||||||||| | || || ||||| |||||||||||||| || ||||||||||| |||| |
|
|
| T |
28138358 |
acagaatcaaagtcaggattgtctctgccagagcttatcattcactctttatgcataacatgt |
28138296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University