View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_high_7 (Length: 440)
Name: NF14340_high_7
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 6184778 - 6185208
Alignment:
| Q |
1 |
atcaatgtgtcatttacctttgatgtcacaccaaaaatatcctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtgacacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6184778 |
atcaatgtgtcatttacctttgatgtcacaccaaaaatatcctcacctttgaattgaagagttaacaaaattattatttggtacaaagcttgtgacacaa |
6184877 |
T |
|
| Q |
101 |
gattcctccacataatgttagtaataagaggctttgttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184878 |
gattcctccacataatgttagtaataagaggctttgttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagc |
6184977 |
T |
|
| Q |
201 |
acctaatgtatccataattaaattcacccataataattgaactgctgttaatggtacttcgccggctgaaaccgcggctacgaaattgataacaagtgct |
300 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||| |
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| T |
6184978 |
acctaatgtatccataatcaaattcacccataataattgaactgctgttaatggtacttcaccggctgaaaccgccgcaacgaaattgataacaagggct |
6185077 |
T |
|
| Q |
301 |
gccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
6185078 |
gccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaacactgttacgatagatgcaaaattgtcat |
6185177 |
T |
|
| Q |
401 |
ctaatataacaatatctgaactctcctttgc |
431 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
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| T |
6185178 |
ctaatataacaatatctgaactctcttttgc |
6185208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 4 - 435
Target Start/End: Original strand, 4235657 - 4236088
Alignment:
| Q |
4 |
aatgtgtcatttacctttgatgtcacaccaaaaatatcctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtgacacaagat |
103 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4235657 |
aatgtgtcatttaccttcgaagtcacaccaaaaatactctcacctttaaactgaagagttaataaaattactatttggtacaaagcttgtgacaaaagat |
4235756 |
T |
|
| Q |
104 |
tcctccacataatgttagtaataagaggctttgttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacc |
203 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
4235757 |
tcctccacataatgttagttataagaggctttgttctaccaacaggttctttatccattaaatccttagtaggtttttcagttgcaagagccaatgcacc |
4235856 |
T |
|
| Q |
204 |
taatgtatccataattaaattcacccataataattgaactgctgttaatggtacttcgccggctgaaaccgcggctacgaaattgataacaagtgctgcc |
303 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||| || || ||||| ||||||||||||||| |
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|
| T |
4235857 |
taatgtatccataatcaaattcacccataataattgaactgctgttaacggaacttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgcc |
4235956 |
T |
|
| Q |
304 |
acattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatcta |
403 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||| |
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|
| T |
4235957 |
acattcactgttaattgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttataactgttacaatagatgcaaaattgtcatcta |
4236056 |
T |
|
| Q |
404 |
atataacaatatctgaactctcctttgctact |
435 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |
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|
| T |
4236057 |
atataacaatatctgaactctcttttgctact |
4236088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 30441653 - 30441398
Alignment:
| Q |
1 |
atcaatgtgtcatttacctttgatgtcacaccaaaaatatcctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtgacacaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||| || |
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|
| T |
30441653 |
atcaatgtgtcatttacctttaatgtcacaccaaaattattgtcacctttgaattgaaaagtcaacaaaattgatatttgatacaaggcttgtgacataa |
30441554 |
T |
|
| Q |
101 |
gattcctccacataatgttagtaataagaggctttgttctaccaac-tggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaag |
199 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||| |||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
30441553 |
gattcctctacgtaatgcttgtaataagaggctttattctaccaacaattttttttatccattagttccttagtaggtttttcagttgcaagagccaaag |
30441454 |
T |
|
| Q |
200 |
cacctaatgtatccataattaaattcacccataataattgaactgctgttaatggt |
255 |
Q |
| |
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|| |||||||||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
30441453 |
catctaatgtatccataatcaaattcacccataataattgaactgatattaatggt |
30441398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 284 - 431
Target Start/End: Original strand, 19592829 - 19592967
Alignment:
| Q |
284 |
aattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
|
| Q |
384 |
agatgcaaaattgtcatctaatataacaatatctgaactctcctttgc |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
19592920 |
agatgcaaaattgtcatctaatataacaatatctgagctctcttttgc |
19592967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 374
Target Start/End: Original strand, 38356756 - 38356971
Alignment:
| Q |
159 |
cattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggtact |
258 |
Q |
| |
|
|||||| ||||| ||||| |||| ||||| || ||||||||||||| |||||||||||| | ||||||||| | | |||||||| |||||| || || |
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|
| T |
38356756 |
cattaactcctttgtaggcctttctgttgctagtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaaca |
38356855 |
T |
|
| Q |
259 |
tcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatc |
358 |
Q |
| |
|
|| || | ||||| || || | || || || ||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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|
| T |
38356856 |
tcaccagaagaaactgctgcaataaagtttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatc |
38356955 |
T |
|
| Q |
359 |
ttccccagtttaaaac |
374 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
38356956 |
ttccccaccttaaaac |
38356971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 19592678 - 19592771
Alignment:
| Q |
1 |
atcaatgtgtcatttacctttgatgtcacaccaaaaatatcctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtg |
94 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||| ||| |||| |||| |||||||||||| ||||||| |
|
|
| T |
19592678 |
atcaatgtgtcgtttacctttagtgtcacaccaaaattattgtcacctttgaattgaaaagtcaacataattggtatttggtacaaggcttgtg |
19592771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Original strand, 19592786 - 19592824
Alignment:
| Q |
222 |
attcacccataataattgaactgctgttaatggtacttc |
260 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
19592786 |
attcacccataataattgaactgttattaatggtacttc |
19592824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 29475844 - 29475752
Alignment:
| Q |
1 |
atcaatgtgtcatttacctttgatgtcacaccaaaaatatcctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgt |
93 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29475844 |
atcaatatgtcatttacctttgatgtcataccaaaaataatatcacctttaaattgaagagttaacaaaattactatttggaacaaagcttgt |
29475752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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