View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_10 (Length: 421)
Name: NF14340_low_10
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 41753273 - 41752898
Alignment:
| Q |
8 |
attatacttttccttaggatattattaaacaaaaagaaaatataaaaccatattgtaaaatttctcaaacatt-aatcnnnnnnn-gaaggattctcaaa |
105 |
Q |
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| T |
41753273 |
attatacttttccttaggatattattaaacaaaaagaaaatataaaaccatattgtaaaatttctcaaacatttaatcttttttttgaaggattctcaaa |
41753174 |
T |
|
| Q |
106 |
catttaatcttaaagattctatctctagtcattcatccaaagaaaagaatagcatatannnnnnnctataaaaagtaggaaattgaaagaaacgtgaatc |
205 |
Q |
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| T |
41753173 |
catttaatcttaaagattctacctctagtcattcatccaaagaaaagaatagcatatatttttttctataaaaagtaggaaattgaaagaaacgtgaatc |
41753074 |
T |
|
| Q |
206 |
gctttattgcagtcataaattctatccttttttactttatttcctttttcaataatagtcgaatattttatgaaaaattccagcagagaagtttctaata |
305 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41753073 |
gctttattgcagtcataaattctatccttttt-----------------caataatagtcgaatattttatgaaaaattccagcagagaagtttctaata |
41752991 |
T |
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| Q |
306 |
ttccacctgtaaaataaattctttccttcctttgtaaatacaacaaaaatcatatattttaagaaaaattccaacaaagaaatttccacagta |
398 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41752990 |
ttccacctgtaaaataaattatttccttcctttgtaaatacaacaaaaatcatatattttaagaaaaattccaacaaagaaatttccacagta |
41752898 |
T |
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