View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14340_low_13 (Length: 384)

Name: NF14340_low_13
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14340_low_13
NF14340_low_13
[»] chr8 (9 HSPs)
chr8 (1-368)||(4120587-4120954)
chr8 (138-368)||(4130987-4131217)
chr8 (179-368)||(4160137-4160326)
chr8 (208-368)||(4143631-4143792)
chr8 (209-368)||(4151505-4151664)
chr8 (1-139)||(4130671-4130808)
chr8 (1-73)||(4160052-4160123)
chr8 (1-75)||(4151035-4151109)
chr8 (2-73)||(4143024-4143094)
[»] chr7 (14 HSPs)
chr7 (208-361)||(20263551-20263704)
chr7 (213-366)||(20062930-20063083)
chr7 (212-361)||(20294176-20294325)
chr7 (213-361)||(20243061-20243209)
chr7 (209-361)||(20279077-20279229)
chr7 (232-366)||(20288770-20288904)
chr7 (214-363)||(19938582-19938731)
chr7 (214-363)||(19969721-19969870)
chr7 (209-361)||(20283654-20283806)
chr7 (302-366)||(20005816-20005880)
chr7 (209-361)||(20273366-20273518)
chr7 (214-361)||(20231096-20231243)
chr7 (209-355)||(20168481-20168627)
chr7 (297-361)||(20303242-20303306)
[»] chr2 (6 HSPs)
chr2 (237-366)||(2712948-2713077)
chr2 (291-366)||(2745911-2745986)
chr2 (218-361)||(34328530-34328673)
chr2 (237-366)||(2708024-2708153)
chr2 (302-366)||(2724092-2724156)
chr2 (302-367)||(2718037-2718102)
[»] chr4 (1 HSPs)
chr4 (209-366)||(40824209-40824366)
[»] chr6 (1 HSPs)
chr6 (292-329)||(25810324-25810361)
[»] chr3 (5 HSPs)
chr3 (292-329)||(5445451-5445488)
chr3 (292-329)||(5454034-5454071)
chr3 (292-329)||(5849870-5849907)
chr3 (292-329)||(20342778-20342815)
chr3 (292-328)||(5489227-5489263)


Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 4120587 - 4120954
Alignment:
Q  1 ctccaatctaaatttttcttttgtaacggatcttaaaaaacataaacaatacattaatgtgatgacaaattgggtgcttttaagaacatcaaaaaggatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4120587 ctccaatctaaatttttcttttgtaacggatcttaaaaaacataaacaatacattaatgtgatgacaaattgggtgcttttaagaacattaaaaaggatg 4120686  T
Q  101 aaagatactaacaagatgtttggatatacaacataatttcattaattattttaggctaaaagtaatcaagcaaacaatttaatttgaggttaaaatacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4120687 aaagatactaacaagatgtttggatatacaacataatttcattaattattttaggctaaaagtaatcaagcaaacaatttaatttgaggttaaaatacaa 4120786  T
Q  201 ataagggaaaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4120787 ataagggaaaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaa 4120886  T
Q  301 gaagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttctatt 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4120887 gaagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttctatt 4120954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 138 - 368
Target Start/End: Original strand, 4130987 - 4131217
Alignment:
Q  138 ttcattaattattttaggctaaaagtaatcaagcaaacaatttaatttgaggttaaaatacaaataagggaaaagaactaaccaaagataaagacatcca 237  Q
    |||||||||||||||||||||||||||||  | | ||||||||||||| |||||| ||||||||| || ||||||||||||||||||| |||| ||||||    
T  4130987 ttcattaattattttaggctaaaagtaattgaactaacaatttaattttaggttagaatacaaatgagtgaaaagaactaaccaaagagaaaggcatcca 4131086  T
Q  238 aactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaagattacgatgttgaagtttagaaat 337  Q
    |||| |||||||||||||||||||| |||||||||| ||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  4131087 aacttttatttggcatgaactcatagaccaacattttctctcctctttcaacacaacaaccaagaagtcttacaagattgcgatgttgaagtttagaaat 4131186  T
Q  338 cactactacttcgttcataaattcttctatt 368  Q
    |||||| ||||| ||||| ||||||||||||    
T  4131187 cactacaacttcattcatgaattcttctatt 4131217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 179 - 368
Target Start/End: Original strand, 4160137 - 4160326
Alignment:
Q  179 ttaatttgaggttaaaatacaaataagggaaaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcc 278  Q
    |||||||||||| | ||||||||| ||| |||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||     
T  4160137 ttaatttgaggtaagaatacaaatgaggcaaaagaactaaccaaagagaaaggcatccagactcttatttggcatgaactcataaaccaacatttgctct 4160236  T
Q  279 cccctttctacacaacaaccaagaagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttctatt 368  Q
    || ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4160237 cctctttcaacacagcaaccaagaagtcttacaagattgcgatgttgaagtttagaaatcactgctacttcattcataaattcttctatt 4160326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 208 - 368
Target Start/End: Original strand, 4143631 - 4143792
Alignment:
Q  208 aaaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtct 307  Q
    |||| |||||||||||||  ||  |||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||||||    
T  4143631 aaaataactaaccaaagaggaatgcatccaaacttttgtttggcatgaactcataaaccaacatttgctctcctctttcaacacaacaacctagaagtct 4143730  T
Q  308 tacaaga-ttacgatgttgaagtttagaaatcactactacttcgttcataaattcttctatt 368  Q
    ||| ||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4143731 tacgagatttccgatgttgaagtttagaaatcactactacttcgttcatgaattcttctatt 4143792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 209 - 368
Target Start/End: Original strand, 4151505 - 4151664
Alignment:
Q  209 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtctt 308  Q
    |||||||||||||||||  ||  |||||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| | ||||||     
T  4151505 aaagaactaaccaaagaggaatgcatccaaacttttatttggcatgaactcataaaccaaaatttgctctcctctttcaacacagcaacctaaaagtctc 4151604  T
Q  309 acaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttctatt 368  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  4151605 acaagattgcgatgttgaagtttagaaatcactacaacttcattcatgaattcttctatt 4151664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 4130671 - 4130808
Alignment:
Q  1 ctccaatctaaatttttcttttgtaacggatcttaaaaaacataaacaatacattaatgtgatgacaaattgggtgcttttaagaacatcaaaaaggatg 100  Q
    ||||||||||| |||||||||||||  ||||||||||||||||||||||||  ||||||||||||||||||| |||| |||||||||||  |  || |||    
T  4130671 ctccaatctaactttttcttttgtattggatcttaaaaaacataaacaataacttaatgtgatgacaaattgagtgc-tttaagaacattgagcagcatg 4130769  T
Q  101 aaagatactaacaagatgtttggatatacaacataattt 139  Q
    ||| | ||||| ||||| ||||||||||||| |||||||    
T  4130770 aaacacactaagaagatatttggatatacaatataattt 4130808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4160052 - 4160123
Alignment:
Q  1 ctccaatctaaatttttcttttgtaacggatcttaaaaaacataaacaatacattaatgtgatgacaaattgg 73  Q
    ||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  4160052 ctccaatctaaatttttcttttgcaatggatcttaaaa-acataaagaatacattaatgtgatgacaaattgg 4160123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 4151035 - 4151109
Alignment:
Q  1 ctccaatctaaatttttcttttgtaacggatcttaaaaaacataaacaatacattaatgtgatgacaaattgggt 75  Q
    |||||||||||||||||||||||||  |||||| || ||| ||||| ||||||||||||||||| ||||||||||    
T  4151035 ctccaatctaaatttttcttttgtagtggatctaaagaaaaataaagaatacattaatgtgatgccaaattgggt 4151109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 4143024 - 4143094
Alignment:
Q  2 tccaatctaaatttttcttttgtaacggatcttaaaaaacataaacaatacattaatgtgatgacaaattgg 73  Q
    |||||||||| ||||||||||||| |||||||||||| | ||||| |||||||||||||||||| |||||||    
T  4143024 tccaatctaagtttttcttttgtagcggatcttaaaaca-ataaagaatacattaatgtgatgataaattgg 4143094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 208 - 361
Target Start/End: Complemental strand, 20263704 - 20263551
Alignment:
Q  208 aaaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtct 307  Q
    |||| |||||||||||||| ||  |||||||||| || ||||||||  ||||||| | |||||| |  ||  | | ||| |||||||| |||| ||||||    
T  20263704 aaaaaaactaaccaaagatgaatgcatccaaacttttgtttggcatatactcatacatcaacatcttttcatcaccttcaacacaacagccaataagtct 20263605  T
Q  308 tacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    |||||||||||| |||||||| ||| ||||||| |||| ||||||||| |||||    
T  20263604 tacaagattacggtgttgaagcttacaaatcaccactatttcgttcatgaattc 20263551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 366
Target Start/End: Original strand, 20062930 - 20063083
Alignment:
Q  213 aactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaa 312  Q
    |||||||| ||||||||  |||||||||| || ||||||||| ||||||| | |||||| |  ||  | |  || | |||||| ||||||||||||||||    
T  20062930 aactaaccgaagataaatgcatccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccgtcaatacaacagccaagaagtcttacaa 20063029  T
Q  313 gattacgatgttgaagtttagaaatcactactacttcgttcataaattcttcta 366  Q
    ||||||| |||||||| ||| |||  || |||||||| ||||| ||||||||||    
T  20063030 gattacggtgttgaagcttacaaaggaccactacttcattcatgaattcttcta 20063083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 20294325 - 20294176
Alignment:
Q  212 gaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttaca 311  Q
    ||||||||||||||| ||  ||||||||||||| ||||||||| ||||||| | |||||| | |||  | | ||| | ||| || |||||||| ||||||    
T  20294325 gaactaaccaaagatgaatgcatccaaactcttgtttggcatgtactcatacatcaacatcttctcatcgccttcaatacagcagccaagaagccttaca 20294226  T
Q  312 agattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    |||||||| |||||||| ||| |||  || |||||||| ||||| |||||    
T  20294225 agattacggtgttgaagcttacaaagaaccactacttcattcatgaattc 20294176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 361
Target Start/End: Complemental strand, 20243209 - 20243061
Alignment:
Q  213 aactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaa 312  Q
    |||||||||||||||||  |||||||||| || ||||||||| | ||||| | |||||| |  ||  | | ||| |||||||| |||| ||| |||||||    
T  20243209 aactaaccaaagataaatgcatccaaacttttgtttggcatgtattcatacatcaacatcttttcatcaccttcaacacaacagccaataagccttacaa 20243110  T
Q  313 gattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    | || ||||||||||| ||| ||||||| | |||||||||||| |||||    
T  20243109 ggttgcgatgttgaagcttacaaatcaccaatacttcgttcatgaattc 20243061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 20279229 - 20279077
Alignment:
Q  209 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtctt 308  Q
    |||||||||||||||||| ||  |||||||||| || ||||||||| ||||||| | |||||| |  ||  | | ||| | |||||||||||||||| |     
T  20279229 aaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccttcaatacaacaaccaagaagttta 20279130  T
Q  309 acaagattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    |||||||| || |||||||| ||| |||  || |||||||| |||||||||||    
T  20279129 acaagattgcggtgttgaagcttacaaaggaccactacttcattcataaattc 20279077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 232 - 366
Target Start/End: Complemental strand, 20288904 - 20288770
Alignment:
Q  232 catccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaagattacgatgttgaagttt 331  Q
    |||||||||| |||||||||||| ||||||| | |||||| |  ||| | | ||| ||||| || |||||||||||||  ||||| ||||||||||| ||    
T  20288904 catccaaacttttatttggcatgtactcatatatcaacatcttttcctctccttcaacacagcagccaagaagtcttatcagattgcgatgttgaagctt 20288805  T
Q  332 agaaatcactactacttcgttcataaattcttcta 366  Q
    | |||| || |||||||| ||| | ||||||||||    
T  20288804 acaaatgacaactacttcattcttgaattcttcta 20288770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 363
Target Start/End: Complemental strand, 19938731 - 19938582
Alignment:
Q  214 actaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaag 313  Q
    |||||||||||| |||  |||||||||| |||||||||||| ||||||| | |||||| |  ||| | |  || ||||| || ||||||||| |||||||    
T  19938731 actaaccaaagagaaaagcatccaaacttttatttggcatgtactcatatatcaacatcttttcctctccgtcaacacagcagccaagaagttttacaag 19938632  T
Q  314 attacgatgttgaagtttagaaatcactactacttcgttcataaattctt 363  Q
    ||| || |||||||| |||||||| ||  | ||||| ||||| |||||||    
T  19938631 attgcggtgttgaagcttagaaatgaccgccacttcattcatgaattctt 19938582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 363
Target Start/End: Complemental strand, 19969870 - 19969721
Alignment:
Q  214 actaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaag 313  Q
    |||||||||||| |||  |||||||||| |||||||||||| ||||||| | |||||| |  ||| | |  || ||||| || ||||||||| |||||||    
T  19969870 actaaccaaagagaaaagcatccaaacttttatttggcatgtactcatatatcaacatcttttcctctccgtcaacacagcagccaagaagttttacaag 19969771  T
Q  314 attacgatgttgaagtttagaaatcactactacttcgttcataaattctt 363  Q
    ||| || |||||||| |||||||| ||  | ||||| ||||| |||||||    
T  19969770 attgcggtgttgaagcttagaaatgaccgccacttcattcatgaattctt 19969721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 20283806 - 20283654
Alignment:
Q  209 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtctt 308  Q
    |||||||||||||||||| ||  |||||||| | ||||||||||||  |||||| | |||||| |  ||  | | ||| |||||||| |||| |||||||    
T  20283806 aaagaactaaccaaagatgaacgcatccaaagttttatttggcatgtcctcatacatcaacatcttttcatctccttcaacacaacagccaaaaagtctt 20283707  T
Q  309 acaagattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    |||||||| || |||||||| |||  |||||| | |||||| ||||| |||||    
T  20283706 acaagattgcggtgttgaagcttactaatcaccattacttcattcatgaattc 20283654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 20005816 - 20005880
Alignment:
Q  302 aagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttcta 366  Q
    ||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| ||||||||||    
T  20005816 aagtcttacaagattgcggtgctgaagcttagaaatcactacgacttcattcatgaattcttcta 20005880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 361
Target Start/End: Complemental strand, 20273518 - 20273366
Alignment:
Q  209 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtctt 308  Q
    |||||||||||||||||| ||  |||||||||| || ||||||||| ||||||| | |||||| |  ||  | |  ||   ||| || ||||||||||||    
T  20273518 aaagaactaaccaaagatgaatgcatccaaacttttgtttggcatgtactcatacatcaacatcttttcatcaccatcagtacagcagccaagaagtctt 20273419  T
Q  309 acaagattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    ||||||||||| |||||||| ||| |||  || |||||||| ||||| |||||    
T  20273418 acaagattacggtgttgaagcttacaaagaaccactacttcattcatgaattc 20273366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 361
Target Start/End: Complemental strand, 20231243 - 20231096
Alignment:
Q  214 actaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaag 313  Q
    ||||||||||||| ||   ||||||||| || ||||||||| | ||||| | |||||| |  ||  | | ||| |||||||| |||| ||||||||||||    
T  20231243 actaaccaaagatgaatgaatccaaacttttgtttggcatgtattcatacatcaacatcttttcatcaccttcaacacaacagccaataagtcttacaag 20231144  T
Q  314 attacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
     || || |||||||| ||| |||| || |||||||||||||| |||||    
T  20231143 gttgcggtgttgaagcttacaaattaccactacttcgttcatgaattc 20231096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 355
Target Start/End: Original strand, 20168481 - 20168627
Alignment:
Q  209 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtctt 308  Q
    |||||||||||||||||| ||  ||||||||||  | ||| ||||| ||||||| | |||||| |  ||  | | ||| | ||| ||||||| |||||||    
T  20168481 aaagaactaaccaaagatgaatgcatccaaacttctgtttagcatgtactcatacatcaacatcttttcatcgccttcaatacagcaaccaacaagtctt 20168580  T
Q  309 acaagattacgatgttgaagtttagaaatcactactacttcgttcat 355  Q
    |||||||| || |||||||| ||| |||| || |||||||| |||||    
T  20168581 acaagattgcggtgttgaagcttacaaataaccactacttcattcat 20168627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 20303306 - 20303242
Alignment:
Q  297 ccaagaagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    ||||||||||||||||||||||| |||||||| ||| |||  || |||||||| ||||| |||||    
T  20303306 ccaagaagtcttacaagattacggtgttgaagcttacaaaggaccactacttcattcatgaattc 20303242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 2712948 - 2713077
Alignment:
Q  237 aaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaagattacgatgttgaagtttagaaa 336  Q
    ||||| ||||| |||||| | ||||| ||||||||||  ||  ||| ||| |  |||||||| ||||||||||||||||| ||||||||||| || ||||    
T  2712948 aaactattattcggcatgtattcatagaccaacattttttcttccccttcgatgcaacaacctagaagtcttacaagattgcgatgttgaagctttgaaa 2713047  T
Q  337 tcactactacttcgttcataaattcttcta 366  Q
    |||| |  ||||||||||||||||||||||    
T  2713048 tcacaatcacttcgttcataaattcttcta 2713077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 2745911 - 2745986
Alignment:
Q  291 caacaaccaagaagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttcta 366  Q
    ||||| || |||||||| |||||||| ||||||||||| || |||||||| |  ||||| ||||||||||||||||    
T  2745911 caacagcctagaagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttcta 2745986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 361
Target Start/End: Complemental strand, 34328673 - 34328530
Alignment:
Q  218 accaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaagatta 317  Q
    |||||||||||||   ||||||||  |||| |||||| | |||||||||| ||||| |||| | | ||| |  ||||||||||||||  ||||||||||     
T  34328673 accaaagataaaggagtccaaactactattaggcatgtattcataaaccagcattttctcctctccttcaaggcaacaaccaagaagctttacaagattt 34328574  T
Q  318 cgatgttgaagtttagaaatcactactacttcgttcataaattc 361  Q
    || ||||||||||| | ||||| |  |||||||||  |||||||    
T  34328573 cggtgttgaagtttcgcaatcaattttacttcgtttttaaattc 34328530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 237 - 366
Target Start/End: Original strand, 2708024 - 2708153
Alignment:
Q  237 aaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtcttacaagattacgatgttgaagtttagaaa 336  Q
    ||||| ||||| |||||| ||||||| |||||||| |  ||  ||| ||| |  || ||||| ||||||||||||||||| ||||||||||| || || |    
T  2708024 aaactgttattaggcatgtactcatagaccaacatcttttcgtccccttcaatgcagcaacctagaagtcttacaagattgcgatgttgaagctttgata 2708123  T
Q  337 tcactactacttcgttcataaattcttcta 366  Q
    | || |  ||||| ||||||||||||||||    
T  2708124 taacaatcacttcattcataaattcttcta 2708153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 2724092 - 2724156
Alignment:
Q  302 aagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttcta 366  Q
    |||||| |||||||| ||||||||||| || |||||||| |  ||||| ||||||||||||||||    
T  2724092 aagtctaacaagattgcgatgttgaagcttggaaatcacaatcacttcattcataaattcttcta 2724156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 2718037 - 2718102
Alignment:
Q  302 aagtcttacaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttctat 367  Q
    |||||||| |||||||||||||||||| |  ||||| || |  ||||| |||||||||||||||||    
T  2718037 aagtcttagaagattacgatgttgaagctctgaaattacaatcacttcattcataaattcttctat 2718102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 209 - 366
Target Start/End: Original strand, 40824209 - 40824366
Alignment:
Q  209 aaagaactaaccaaagataaagacatccaaactcttatttggcatgaactcataaaccaacatttgctcccccctttctacacaacaaccaagaagtctt 308  Q
    |||||||| |||||||| |||  |||||||||| |||||||||||| |||| || | |||||| |  ||| |   ||| ||||| || |||| |||||||    
T  40824209 aaagaactgaccaaagacaaatgcatccaaacttttatttggcatgtactcgtatatcaacatcttttcctctgcttcaacacagcagccaataagtctt 40824308  T
Q  309 acaagattacgatgttgaagtttagaaatcactactacttcgttcataaattcttcta 366  Q
    | |||||| ||||||||||| ||| ||||||| |||||||| ||| | ||||||||||    
T  40824309 ataagattgcgatgttgaagcttacaaatcacaactacttcattcttgaattcttcta 40824366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 25810361 - 25810324
Alignment:
Q  292 aacaaccaagaagtcttacaagattacgatgttgaagt 329  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  25810361 aacaaccaagaagttttacaagattacggtgttgaagt 25810324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 5445451 - 5445488
Alignment:
Q  292 aacaaccaagaagtcttacaagattacgatgttgaagt 329  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  5445451 aacaaccaagaagttttacaagattacggtgttgaagt 5445488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 5454034 - 5454071
Alignment:
Q  292 aacaaccaagaagtcttacaagattacgatgttgaagt 329  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  5454034 aacaaccaagaagttttacaagattacggtgttgaagt 5454071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Complemental strand, 5849907 - 5849870
Alignment:
Q  292 aacaaccaagaagtcttacaagattacgatgttgaagt 329  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  5849907 aacaaccaagaagttttacaagattacggtgttgaagt 5849870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 329
Target Start/End: Original strand, 20342778 - 20342815
Alignment:
Q  292 aacaaccaagaagtcttacaagattacgatgttgaagt 329  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  20342778 aacaaccaagaagttttacaagattacggtgttgaagt 20342815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 5489227 - 5489263
Alignment:
Q  292 aacaaccaagaagtcttacaagattacgatgttgaag 328  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  5489227 aacaaccaagaagttttacaagattacggtgttgaag 5489263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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