View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14340_low_16 (Length: 362)
Name: NF14340_low_16
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 3723417 - 3723079
Alignment:
| Q |
7 |
atgtcgaagaatatttggaactatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatga |
106 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723417 |
atgtcgaaggatatttggaactatcagctaagacgaaaacctatttttcaactgttcttgccttgtgggatgcagaattttatgtcaaagttgatgatga |
3723318 |
T |
|
| Q |
107 |
tgttcatgtgaatttaggtacattgaaaaattcttctgtgttgacagtttgttttgtttgataaaatacttacttgctccttatatgtatgtaggaaaat |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
3723317 |
tgttcatgtgaatttaggtacattgaaaaattcttctgcgtttacagtttgttttgtttgataaaattcttacttgctccttatatgtatgcaggaaaat |
3723218 |
T |
|
| Q |
207 |
tactttgcattgttttataaaagaacaaatgaattagttaaatttattacaacttttaagtgaaaaatacaccttcttacttgtatgattgaatgattga |
306 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723217 |
tactttacattgttttataaaagaacaaatgaattagttaaatttattacaactgttaagtaaaaaatacaccttcttacttgtatgattgaatgattga |
3723118 |
T |
|
| Q |
307 |
agcttctaattctaaaaatgaaagggaaccatttgctta |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3723117 |
agcttctaattctaaaaatgaaagggaaccatttgctta |
3723079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 17124754 - 17124808
Alignment:
| Q |
72 |
tgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
126 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||| ||| |||||| |
|
|
| T |
17124754 |
tgggatgctgatttttatgtcaaagttgatgacgatgttcatgtaaatataggta |
17124808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 37186483 - 37186385
Alignment:
| Q |
28 |
tatcagctaagacgaaaacctatttttcaactgttgttgccttgtgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
126 |
Q |
| |
|
||||||| ||||| || ||||||||| | |||| |||| |||||||||||| || || ||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
37186483 |
tatcagcaaagacaaagacctattttgccactgctgttaacttgtgggatgctgacttctatatcaaagttgatgatgatgttcatgtaaatataggta |
37186385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 33084541 - 33084487
Alignment:
| Q |
72 |
tgggatgcagaattttatgtcaaagttgatgatgatgttcatgtgaatttaggta |
126 |
Q |
| |
|
|||||||| || || ||||||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
33084541 |
tgggatgctgatttctatgtcaaagtagatgacgatgttcatgtcaatttaggta |
33084487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University