View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_18 (Length: 355)
Name: NF14340_low_18
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_18 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 2430880 - 2430520
Alignment:
| Q |
1 |
attcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatct |
100 |
Q |
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| T |
2430880 |
attcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatct |
2430781 |
T |
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| Q |
101 |
ttgtggtgtttgtgttgtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtaccttaatttaattt |
200 |
Q |
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| T |
2430780 |
ttgtggtgtttgtgttgtacatgtacacatctaatacaactggccacatggtctgtacattcatctaacaaattgccaaatatgtaccttaatttaattt |
2430681 |
T |
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| Q |
201 |
caaggaacgatttagtcttttatct------tcnnnnnnnnncacattatttttgcccttttgatccatttgatatgaatattcaagttttaaatgtatg |
294 |
Q |
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| T |
2430680 |
caaggaacgatttagtcttttatcttttatcttcttttttttcacattatttttgcccttttgatccatttgatatgaatattcaacttttaaatctatg |
2430581 |
T |
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| Q |
295 |
atttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatat |
355 |
Q |
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| T |
2430580 |
atttatttccttgtgacctctcagtctttagatttatggtctttcatccaagtttgcatat |
2430520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 2434454 - 2434339
Alignment:
| Q |
7 |
gtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtgg |
106 |
Q |
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| T |
2434454 |
gtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcacttccgccatctcaggaattgtgtcactaaaatctttgtgg |
2434355 |
T |
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| Q |
107 |
tgtttgtgttgtacat |
122 |
Q |
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| T |
2434354 |
tgtttgtgttgtacat |
2434339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 2498974 - 2499037
Alignment:
| Q |
2 |
ttcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctca |
65 |
Q |
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| T |
2498974 |
ttcatgtctgattctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctca |
2499037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 1457919 - 1457834
Alignment:
| Q |
1 |
attcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg |
86 |
Q |
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||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||| | |||||||| |
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| T |
1457919 |
attcatgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg |
1457834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 2427626 - 2427541
Alignment:
| Q |
1 |
attcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg |
86 |
Q |
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| T |
2427626 |
attcatgtctgattccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg |
2427541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 2519311 - 2519370
Alignment:
| Q |
2 |
ttcatgtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
61 |
Q |
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| T |
2519311 |
ttcatgtctgattctttaggaaaaccagacacatagtgtttcagaattacttgcttgttc |
2519370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2507514 - 2507568
Alignment:
| Q |
7 |
gtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
61 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
2507514 |
gtctgattctttaggaaaaccagacacatagtgtttcagaagcacttgcttgttc |
2507568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2514604 - 2514658
Alignment:
| Q |
7 |
gtctgattctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
61 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| |||||||| |||| |
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| T |
2514604 |
gtctgattctttaggaaaaccagacacataatgtttcagaagcacttgctggttc |
2514658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 226
Target Start/End: Complemental strand, 2434264 - 2434227
Alignment:
| Q |
189 |
ttaatttaatttcaaggaacgatttagtcttttatctt |
226 |
Q |
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| T |
2434264 |
ttaatttaatttcaagtaacgatttagttttttatctt |
2434227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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