View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_19 (Length: 351)
Name: NF14340_low_19
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 10818644 - 10818472
Alignment:
| Q |
2 |
agagaggtgtatcaaaccttgccatgcatactcagcagcctcagaaagcaaatataaatatttatatatatggtagcgagagacatgcattgcagagcaa |
101 |
Q |
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| T |
10818644 |
agagaggtgtatcaaaccttgccatgcatgctcagcagcctcaggaagcaaatataaatatttatatatatggtagcgagagacatgcat-gcagagcaa |
10818546 |
T |
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| Q |
102 |
actctggtgtcaaagaagaataatcaggaacatatttttcaaaccaaatttaaatattaagaatatataatcat |
175 |
Q |
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| T |
10818545 |
actctggtgtcaaagaagaataatcaggaacatatttttcaaaccaaatttaaatattaagaatatataatcat |
10818472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 197 - 335
Target Start/End: Complemental strand, 10818164 - 10818026
Alignment:
| Q |
197 |
aaacataccatgtgtctagtgacattattgtcatgttgcatatctgatctactaggcattcaatctgcatcacaagagacattaataacacattttacga |
296 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10818164 |
aaacataccatgtgtctagtgacattattgtcacgttgcatatgtgatctactaggcattcaatctgcatcacaagagacattaataacacattttacga |
10818065 |
T |
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| Q |
297 |
tatcacattgtgggaaaattaagacacataccatatata |
335 |
Q |
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| T |
10818064 |
tatcacattgtgggaaaattaagacacataccatatata |
10818026 |
T |
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