View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14340_low_2 (Length: 616)
Name: NF14340_low_2
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 43695218 - 43695799
Alignment:
| Q |
18 |
tttataacttctaaaccaaaaaacaaccatggtaaacaaggtatagtatgttaaccagatnnnnnnncacatttcatataatgattcaaaatataatact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43695218 |
tttataacttctaaaccaaaaaacaaccatggtaaacaaggtatagtatgttaaccagataaaaaaacacatttcatataatgattcaaaatataatact |
43695317 |
T |
|
| Q |
118 |
atgaacgacattgaaatgaatccatacatagctataagtctatggtctccaactcccacatcccaattcagaatccaaatctctttcttcgaatcctttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43695318 |
atgaacgacattgaaatgaatccatacatagctataagtctatggtctccaactcccacatcccaattcagaatccaaatctctttcttcgaatcctttc |
43695417 |
T |
|
| Q |
218 |
attttcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtcct |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43695418 |
gttttcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgcctttagcctccccgattccagctctaccgcagccacattgtcct |
43695517 |
T |
|
| Q |
318 |
tcaacttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43695518 |
tcaacttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctc |
43695617 |
T |
|
| Q |
418 |
aagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcagcg |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43695618 |
aagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcttaaggaaataaataactctccccaatgcagcg |
43695717 |
T |
|
| Q |
518 |
aatgccaaatcagtaaacttgcgacttctcttcgatgggcgctcactgagtgaaggattatcagaatatgtttcctccattt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43695718 |
aatgccaaatcagtaaacttgcgacttctcttcgatgggcgctcactgagtgaaggattatcagaatatgtttcctccattt |
43695799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 339 - 547
Target Start/End: Original strand, 43709432 - 43709640
Alignment:
| Q |
339 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
438 |
Q |
| |
|
|||||||||| || ||||| |||| ||||||| |||||||||| || || |||||||||| ||||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
43709432 |
ctttctccacgtaacttttcattcttaaagcaaattgaacatgaggctctagccaagccagatcaaatccaaatatctcaagttcctcccataaaatttg |
43709531 |
T |
|
| Q |
439 |
aagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaacttg |
538 |
Q |
| |
|
||||||||| ||||| || |||||||||||| || | ||||||||| |||||||||||| |||||| ||||| || | ||| ||| | ||||| ||| || |
|
|
| T |
43709532 |
aagatccttgcaagcttgatcattcatgtctttcgcctttctagtcttaaggaaataaagaactctgcccaaagcggtgaaagcccattcagtgaacctg |
43709631 |
T |
|
| Q |
539 |
cgacttctc |
547 |
Q |
| |
|
||||||||| |
|
|
| T |
43709632 |
cgacttctc |
43709640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 339 - 550
Target Start/End: Original strand, 43707708 - 43707920
Alignment:
| Q |
339 |
ctttctccacatagcttttaattcctaaagcagattgaacatggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttg |
438 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| ||| ||||||| | || ||||||| | ||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
43707708 |
ctttctccacaaaacttttcattcctaaagcacatttaacatggagctctagccaagtgagatcaaatctaaatttctcaagttcctcgtataaaacttt |
43707807 |
T |
|
| Q |
439 |
aagatccttacaagcctggtcattcatgtctctcact-tttctagtcgtaaggaaataaataactctccccaatgcagcgaatgccaaatcagtaaactt |
537 |
Q |
| |
|
| ||||||||||| ||||||||||| ||| ||||| || ||||| | | |||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
43707808 |
agtatccttacaaggttggtcattcatatctttcactcgttttagtcttgggaaaataaataactctccccaatgtggcgaatgccaagtcagtaaactt |
43707907 |
T |
|
| Q |
538 |
gcgacttctcttc |
550 |
Q |
| |
|
|| |||| ||||| |
|
|
| T |
43707908 |
gcaacttatcttc |
43707920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 510
Target Start/End: Original strand, 43696407 - 43696500
Alignment:
| Q |
417 |
caagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaa |
510 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |||||||| | | |||| || |||||| |||||||||||| |||||| ||||| |
|
|
| T |
43696407 |
caagttcctcccagaaaatttgaagatccttacaagctaaatcattcatatatttcaccttcctagtcttaaggaaataaagaactctgcccaa |
43696500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 457 - 515
Target Start/End: Original strand, 43691274 - 43691332
Alignment:
| Q |
457 |
gtcattcatgtctctcacttttctagtcgtaaggaaataaataactctccccaatgcag |
515 |
Q |
| |
|
||||||||| ||| || ||||||||||| |||||||||||| |||||| ||||| |||| |
|
|
| T |
43691274 |
gtcattcatatctttcccttttctagtcttaaggaaataaagaactctgcccaaagcag |
43691332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 178 - 516
Target Start/End: Complemental strand, 15827530 - 15827192
Alignment:
| Q |
178 |
tcccaattcagaatccaaatctctttcttcgaatcctttcattttcaacaaatttctttccatgtcaagatttgccctagcagcaatcagctttgccttt |
277 |
Q |
| |
|
||||||||||||||| |||||| ||||| ||| ||||| ||||||||| | |||||||||||||||||| | ||| |||| | ||| ||||| |
|
|
| T |
15827530 |
tcccaattcagaatctaaatctaattctttgaaacctttggatttcaacaagtctctttccatgtcaagattcatctcagctgcaagcgacttaaccttt |
15827431 |
T |
|
| Q |
278 |
agcctccccgattccagctctaccgcagccacattgtccttcaacttttcaacttctacggctttctccacatagcttttaattcctaaagcagattgaa |
377 |
Q |
| |
|
||||| || ||| ||||||| | ||| || ||||||| ||||||| | || | |||||||||| || ||||| |||||||||||| | |||| |
|
|
| T |
15827430 |
agcctttccatttcaagctctaaaactaccatgttctccttcatcttttcagcctccagagctttctccatgtatctttttattcctaaagcatagtgaa |
15827331 |
T |
|
| Q |
378 |
catggggatcaagccaagccatatcaaatttaaacttctcaagttcctcccataaaacttgaagatccttacaagcctggtcattcatgtctctcacttt |
477 |
Q |
| |
|
|||| | || ||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
15827330 |
catgcgattctagccaagtaatatcaaatttaaatttcgctagttcctcccataaaacttgaagatccttacaagcttgttcattcatgtctctcgcttt |
15827231 |
T |
|
| Q |
478 |
tctagtcgtaaggaaataaataactctccccaatgcagc |
516 |
Q |
| |
|
||||||| |||||||||| | |||| | || |||||||| |
|
|
| T |
15827230 |
tctagtcttaaggaaatacagaactttacctaatgcagc |
15827192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University