View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14340_low_20 (Length: 334)

Name: NF14340_low_20
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14340_low_20
NF14340_low_20
[»] chr4 (12 HSPs)
chr4 (20-330)||(38086385-38086695)
chr4 (20-330)||(38072875-38073185)
chr4 (20-330)||(38061603-38061907)
chr4 (97-330)||(38081960-38082193)
chr4 (20-330)||(38058547-38058851)
chr4 (246-307)||(38090804-38090865)
chr4 (20-91)||(38077976-38078048)
chr4 (239-313)||(36080190-36080264)
chr4 (218-320)||(37954219-37954321)
chr4 (270-307)||(38125638-38125675)
chr4 (270-307)||(38129591-38129628)
chr4 (252-309)||(34971530-34971587)
[»] chr6 (3 HSPs)
chr6 (172-307)||(7001405-7001540)
chr6 (123-202)||(10792936-10793015)
chr6 (270-307)||(10792886-10792923)
[»] chr2 (1 HSPs)
chr2 (269-316)||(11787021-11787068)
[»] chr1 (2 HSPs)
chr1 (123-202)||(34268620-34268699)
chr1 (270-307)||(34268712-34268749)


Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 38086695 - 38086385
Alignment:
Q  20 atctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttaccctttgccagacaata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086695 atctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttaccctttgccagacaata 38086596  T
Q  120 ttcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086595 ttcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactg 38086496  T
Q  220 tcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38086495 tcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacc 38086396  T
Q  320 ctttgcttctc 330  Q
    | |||||||||    
T  38086395 cattgcttctc 38086385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 38073185 - 38072875
Alignment:
Q  20 atctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttaccctttgccagacaata 119  Q
    |||||||| ||| |||||||| | |||||||||| ||||||| | |||||||| |||||||| ||||||||||||||||| || ||||||| ||| ||||    
T  38073185 atctacacttcctagaaacaaggattgaaataaagctagtactgttgactttggctcaccttgtttacttgaatttaaatctagcctttgcaagataata 38073086  T
Q  120 ttcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactg 219  Q
    || |||||||  ||||| |||||||||   || | ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  38073085 ttaatggctaagttttcttcaagtttatgagctacaaactgccacttgtgaacaagctttgttgcattttgttccaatgttcttggaacagtaaacaccg 38072986  T
Q  220 tcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacc 319  Q
    | ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  38072985 ttacagttgatggaacttgaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacc 38072886  T
Q  320 ctttgcttctc 330  Q
    | |||||||||    
T  38072885 cattgcttctc 38072875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 38061603 - 38061907
Alignment:
Q  20 atctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttaccctttgccagacaata 119  Q
    |||||||| |||||||||||| |||||||||||| || |||| | ||| ||||||| |||||||||||||      ||||||||||||||| ||| || |    
T  38061603 atctacacttccaagaaacaaggcttgaaataaagcttgtactgttgaatttgacttaccttttttactt------aaatttaccctttgcaagataaca 38061696  T
Q  120 ttcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactg 219  Q
    |  |||||||| |||||||||| | |||||| || ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||    
T  38061697 taaatggctatgttttcatcaattgtacttgtcacaaactgccacttgtgaacaagctttgttgcattttgatccaatgtttttggcacattgaacactg 38061796  T
Q  220 tcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacc 319  Q
     |||| |||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38061797 acacacttgatggaacttgaacaagtttaaccttccatgaaattatgactccaaaacttgctcctccacctcctctaatagcccaaaaaaaatcctcacc 38061896  T
Q  320 ctttgcttctc 330  Q
    | |||||||||    
T  38061897 cattgcttctc 38061907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 97 - 330
Target Start/End: Complemental strand, 38082193 - 38081960
Alignment:
Q  97 aatttaccctttgccagacaatattcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaa 196  Q
    |||||| ||||||  |||||||||| |||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  38082193 aatttatcctttgaaagacaatattgatggctatgttttcatcaattttacttgccaaatactgccacttgtgaacaagctttgttgcattttgttccaa 38082094  T
Q  197 tgtttttggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctcta 296  Q
    || | ||||||| |||||||| |||||  ||| |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38082093 tgctcttggaactgtaaacaccgtcactgttgctggaacttcaacaagttttatcttccatgaaattatgactccaaaacttgctcctccaccacctcta 38081994  T
Q  297 atagcccaaaagaaatcctcaccctttgcttctc 330  Q
    |||||||||||  |||| |||||| |||||||||    
T  38081993 atagcccaaaaataatcttcacccattgcttctc 38081960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 38058851 - 38058547
Alignment:
Q  20 atctacacctccaagaaacaaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttgaatttaaatttaccctttgccagacaata 119  Q
    |||||| |||||||||||||| |||||||||| | || |||| | ||| |||||||  || ||| ||||||||||||      |||||||  ||| || |    
T  38058851 atctactcctccaagaaacaaggcttgaaatatagcttgtactgttgattttgacttcccctttatacttgaattta------ccctttgtaagataaca 38058758  T
Q  120 ttcatggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttttggaacagtaaacactg 219  Q
     | ||  |||  |||||||||| | |||||| |||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| | || ||||    
T  38058757 gtaatttctaagttttcatcaattctacttgtcaaaaactgccacttgtgaataagctttgttgcattgtgttccaatgtttttggaacattgaagactg 38058658  T
Q  220 tcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacc 319  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  38058657 tcacaattgatggaacttgaacaagtttaatcttccatgaaattatgactccaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacc 38058558  T
Q  320 ctttgcttctc 330  Q
    | |||||||||    
T  38058557 cattgcttctc 38058547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 38090865 - 38090804
Alignment:
Q  246 ttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaa 307  Q
    ||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||||||||    
T  38090865 ttaatcttccaagaaacaataacaccaaaactagctccaccaccacctctaatagcccaaaa 38090804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 38078048 - 38077976
Alignment:
Q  20 atctacacctccaagaaa-caaagcttgaaataaaactagtaccggtgactttgactcaccttttttacttga 91  Q
    |||||||||||||| ||| ||| |||| ||||||| ||||||| | |||||||||||||||||||||||||||    
T  38078048 atctacacctccaaaaaaacaaggcttaaaataaagctagtactgttgactttgactcaccttttttacttga 38077976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 36080264 - 36080190
Alignment:
Q  239 aacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatc 313  Q
    |||||||||||||||||||  ||  ||||||||||||||||| || |||||||| || ||||||||||| |||||    
T  36080264 aacaagtttaatcttccatttaagaatgacaccaaaacttgcaccaccaccaccccttatagcccaaaataaatc 36080190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 320
Target Start/End: Complemental strand, 37954321 - 37954219
Alignment:
Q  218 tgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaagaaatcctca 317  Q
    ||||||| |||||||||| | ||| ||||| | ||||||||  |  || || ||||| |||||||||||||| ||||||||||||||||| | |||||||    
T  37954321 tgtcacagttgatggaacatgaactagttttaccttccatgctatgataactccaaagcttgctcctccacctcctctaatagcccaaaacagatcctca 37954222  T
Q  318 ccc 320  Q
    |||    
T  37954221 ccc 37954219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 38125675 - 38125638
Alignment:
Q  270 ccaaaacttgctcctccaccacctctaatagcccaaaa 307  Q
    |||||||||||||||||||| |||||||||||||||||    
T  38125675 ccaaaacttgctcctccacctcctctaatagcccaaaa 38125638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 38129628 - 38129591
Alignment:
Q  270 ccaaaacttgctcctccaccacctctaatagcccaaaa 307  Q
    |||||||||||||||||||| |||||||||||||||||    
T  38129628 ccaaaacttgctcctccacctcctctaatagcccaaaa 38129591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 34971530 - 34971587
Alignment:
Q  252 ttccatgaaactatgacaccaaaacttgctcctccaccacctctaatagcccaaaaga 309  Q
    ||||||||||  || ||||||||||| || || ||||||||||| |||||||||||||    
T  34971530 ttccatgaaagaataacaccaaaactagcaccaccaccacctctgatagcccaaaaga 34971587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 172 - 307
Target Start/End: Original strand, 7001405 - 7001540
Alignment:
Q  172 caagctttgttgcattttgttccaatgtttttggaacagtaaacactgtcacaattgatggaacttcaacaagtttaatcttccatgaaactatgacacc 271  Q
    ||||||||||||||||||| |||||||||||||| | | | |||||||||| | || ||||||||| || |||||||||||||||||||| |||||| ||    
T  7001405 caagctttgttgcattttgatccaatgtttttggcaaattcaacactgtcatactttatggaactttaataagtttaatcttccatgaaattatgactcc 7001504  T
Q  272 aaaacttgctcctccaccacctctaatagcccaaaa 307  Q
    |||||||||||||||| ||||||||||||| |||||    
T  7001505 aaaacttgctcctccagcacctctaatagctcaaaa 7001540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 10793015 - 10792936
Alignment:
Q  123 atggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttt 202  Q
    |||||||| ||| |||||| | |||||| || ||  ||||| ||||||||||| |||||||||||||| |||||||||||    
T  10793015 atggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcattttgatccaatgtttt 10792936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Complemental strand, 10792923 - 10792886
Alignment:
Q  270 ccaaaacttgctcctccaccacctctaatagcccaaaa 307  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  10792923 ccaaaacttgctcctccacctcctctaatagctcaaaa 10792886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 11787021 - 11787068
Alignment:
Q  269 accaaaacttgctcctccaccacctctaatagcccaaaagaaatcctc 316  Q
    |||||||||| | ||||||||||||||||||||||||||||| |||||    
T  11787021 accaaaacttccacctccaccacctctaatagcccaaaagaattcctc 11787068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 34268620 - 34268699
Alignment:
Q  123 atggctatattttcatcaagtttacttgccaaaaattgccacttgtgaacaagctttgttgcattttgttccaatgtttt 202  Q
    |||||||| ||| |||||| | |||||| || ||  ||||| ||||||||||| |||||||||||||| |||||||||||    
T  34268620 atggctatgtttgcatcaattatacttgtcacaagctgccaattgtgaacaagttttgttgcattttgatccaatgtttt 34268699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 34268712 - 34268749
Alignment:
Q  270 ccaaaacttgctcctccaccacctctaatagcccaaaa 307  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  34268712 ccaaaacttgctcctccacctcctctaatagctcaaaa 34268749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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