View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14340_low_22 (Length: 324)
Name: NF14340_low_22
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_22 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 53059249 - 53059558
Alignment:
| Q |
1 |
aacccaacgaaataacccaacttatcattgcaggaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagc |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53059249 |
aacccaacgaaataaccaaacttatcattgcagcaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagc |
53059348 |
T |
|
| Q |
101 |
ttccaacatattcacttgtatgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatttcactactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53059349 |
ttccaacatattcacttgtatgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatttcactactc |
53059448 |
T |
|
| Q |
201 |
aaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgcaaacaaataaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
53059449 |
aaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgttctttcccattctggaggaattgcaaacaaataaag |
53059548 |
T |
|
| Q |
301 |
taaaggtatt |
310 |
Q |
| |
|
|||||||||| |
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|
| T |
53059549 |
taaaggtatt |
53059558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 53068475 - 53068783
Alignment:
| Q |
1 |
aacccaacgaaataacccaacttatcattgcaggaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagc |
100 |
Q |
| |
|
|||||||| | || ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | || ||| ||| |||||||||| |
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|
| T |
53068475 |
aacccaacaatatcaccaaacttatcattgcagcgatacaaagacgaactgaaacccttgaacttaacatgttgtttcatactttcgacttgaaattagc |
53068574 |
T |
|
| Q |
101 |
ttccaacatattcacttgtatgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatttcactactc |
200 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||| || |||||||||||||||||||| |||||||||||||||| |
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|
| T |
53068575 |
ttccaacatattcacttgtaggacacttgctgttctcaaattaaaacgcctaacaatcgtcaaagacattcctcaaataaatagtactatttcactactc |
53068674 |
T |
|
| Q |
201 |
aaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgcaaacaaataaag |
300 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||| |||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||| | |
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|
| T |
53068675 |
aaaactctccacttggatggtgtttatttcaacactcatacacagctcatcgactttctattatcctttccccttctagaggaattgcaaacaaataatg |
53068774 |
T |
|
| Q |
301 |
taaaggtat |
309 |
Q |
| |
|
|||| |||| |
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|
| T |
53068775 |
taaatgtat |
53068783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 37418534 - 37418805
Alignment:
| Q |
20 |
acttatcattgcaggaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagcttccaacatattcacttgt |
119 |
Q |
| |
|
|||||| ||||||| ||||||||||| |||||||||||||||||| | |||| | | || |||||||||||||||||||||||| |||||||| ||| |
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|
| T |
37418534 |
acttattattgcagcaatacaaagacaaactgaaacccttgaactaagtatgtatttttatcctttagacatgaaattagcttccaaaatattcacctgt |
37418633 |
T |
|
| Q |
120 |
atgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaata---aataatactatttcactactcaaaactctccacttgg |
216 |
Q |
| |
|
| |||||||||||||||||||||||| |||| |||||| | | | |||||||| ||| |||||||||||||||| ||||||||||||||||| | |
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|
| T |
37418634 |
aggacgcttactgttctcaaattaaacaaccttacaatcgttgacaaaattcctcagataactaataatactatttcacggctcaaaactctccacttag |
37418733 |
T |
|
| Q |
217 |
atagcgttactttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgc |
288 |
Q |
| |
|
|| | ||| ||||| |||| || | ||||| ||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37418734 |
attgtgttcatttcatgactcgtacgcttatcattgactttctcttttcctttcccattctagaggaattgc |
37418805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 53340867 - 53340729
Alignment:
| Q |
15 |
acccaacttatcattgcaggaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagcttccaacatattca |
114 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||||||||| |
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|
| T |
53340867 |
acccaacttattattgcagccatacaaagacgaactgaaacccttgaacttaacatgttgtttcatactttcgacatgaaattagcttccaacatattca |
53340768 |
T |
|
| Q |
115 |
cttgtatgacgcttactgttctcaaattaaaacacctaa |
153 |
Q |
| |
|
|||||| || | |||||||||| |||||||||| ||||| |
|
|
| T |
53340767 |
cttgtaggaagtttactgttcttaaattaaaactcctaa |
53340729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 53062573 - 53062625
Alignment:
| Q |
246 |
atcatcgactttctcttgtcctttcccattctagaggaattgcaaacaaataa |
298 |
Q |
| |
|
|||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53062573 |
atcatcaacttgctcttatcctttcccattctagaggaattgcaaacaaataa |
53062625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 53062465 - 53062505
Alignment:
| Q |
105 |
aacatattcacttgtatgacgcttactgttctcaaattaaa |
145 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||| |
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|
| T |
53062465 |
aacatatttacttgtaggacgcttactgttctcaaaataaa |
53062505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 31013966 - 31014243
Alignment:
| Q |
12 |
ataacccaacttatcattgcaggaatacaaagacgaactgaaacccttgaacttaacatgttgtctaattttttagacatgaaattagcttccaacatat |
111 |
Q |
| |
|
|||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |||||| |||| |
|
|
| T |
31013966 |
ataacccaacttattatcgcagcaatacaaagatgaactgaaacccttgaacttaacatgttgtttgattctttagacatgaaattagtttccaaaatat |
31014065 |
T |
|
| Q |
112 |
tcacttgtatgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatt------tcactactcaaaac |
205 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||| ||||| || | ||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
31014066 |
tcac---------gcttacttttctcaaattaaaacagctagtaatccgcgaacacattcctcaaataaataataatactatgtcgtcactactcaaaac |
31014156 |
T |
|
| Q |
206 |
tctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgcaaacaaataaagtaaag |
305 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
31014157 |
tca------------------tttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattgaaaacacattaagtaaag |
31014238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 99 - 287
Target Start/End: Original strand, 6687530 - 6687718
Alignment:
| Q |
99 |
gcttccaacatattcacttgtatgacgcttactgttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatttcactac |
198 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||| || | |
|
|
| T |
6687530 |
gcttccaagatattcacttgtaggacgcttactgttctcaaattaactgacctagtaatccgacacgacattcctcaaataaataatcctatttgacacc |
6687629 |
T |
|
| Q |
199 |
tcaaaactctccacttggatagcgttactttcaacactcataaacagatcatcgactttctcttgtcctttcccattctagaggaattg |
287 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||| |||| || ||| ||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
6687630 |
tcaaaactctccacttagatactgttcgtttcatgactcgtacacatatcatcgactttctcttttcctttcccattctcgaggaattg |
6687718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 133 - 281
Target Start/End: Original strand, 48828277 - 48828422
Alignment:
| Q |
133 |
ttctcaaattaaaacacctaacaatcctcggagacattcctcaaataaataatactatttcactactcaaaactctccacttggatagcgttactttcaa |
232 |
Q |
| |
|
||||||||||||| || ||||||||| || || ||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
48828277 |
ttctcaaattaaatgacataacaatccccgacgatattcctcgaataaataatact---tcactactcaaaactcttcacttggataatgttcttttcat |
48828373 |
T |
|
| Q |
233 |
cactcataaacagatcatcgactttctcttgtcctttcccattctagag |
281 |
Q |
| |
|
|| |||| ||| |||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
48828374 |
aacccatacacacatcatcaactttctcttttcctttcccatcctagag |
48828422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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