View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_24 (Length: 307)
Name: NF14340_low_24
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 4946195 - 4946476
Alignment:
| Q |
1 |
cttaaattctcaaaaggacgtgctaaaatgatgttgcaannnnnnnnnnnntataagatgaccatagaacccatagtttgactaaatttaacgagtgaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4946195 |
cttaaattctcaaaaggacgtgctaaaatgatgttgcaaagagagag----tataagatgactatagaacccatagtttgactaaatttaacgagtgaaa |
4946290 |
T |
|
| Q |
101 |
agggatcagccacattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgactctatataaatc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4946291 |
agggatcagccgcattataaacaatattaatccatttcacacgtgtataatttaagtcatcacccgagtattatgcgtgtattgtgactc--tataaatc |
4946388 |
T |
|
| Q |
201 |
acttacatctctttatttctcatcttacaacaatttggaatattaacttcattctctcttcttcatccactttctcttctaatttattt |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4946389 |
acttacatctctttatttctcatcttacaacaatttggaatattaacttca-tctctcttcttcatccactttctcttctaatttattt |
4946476 |
T |
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