View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_28 (Length: 264)
Name: NF14340_low_28
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 35016183 - 35015929
Alignment:
| Q |
5 |
cattttgaaccacgcgattgcaacgtagctgaataaggaacatgctgtcatgtgacacatggtgaggaaaattgggtatttgaaaccgtagtttgagaga |
104 |
Q |
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| T |
35016183 |
cattttgaaccacgcgattgcaacgtagctgaataaggaacatgctgtcatgtgacacatggtgaggaaaattgggtatttgaaaccgtagtttgagaga |
35016084 |
T |
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| Q |
105 |
aggtatttgtttaggagtagaactcctatgttggatgagtaccatgctgagattaatgttattgtgaaggttttgcttgattctttcatggttttgggaa |
204 |
Q |
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| T |
35016083 |
aggtatttgtttaggagtagaactcctatgttggatgagtaccatgctgagattaatgttattgtgaaggttttgcttgattctttcatggttttgggaa |
35015984 |
T |
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| Q |
205 |
ttattgggttttgttcat----ggatctgtgaagaggaattggtttgttagaata |
255 |
Q |
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| T |
35015983 |
ttattgggttttgttcatggatggatctgtgaagaggaattggtttgttagaata |
35015929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 149
Target Start/End: Original strand, 37762948 - 37763049
Alignment:
| Q |
48 |
gctgtcatgtgacacatggtgaggaaaattgggtatttgaaaccgtagtttgagagaaggtatttgtttaggagtagaactcctatgttggatgagtacc |
147 |
Q |
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| T |
37762948 |
gctgtcatgtgacacattgtgaggaagattggaaacttgaaaccataatttgagataaggtacttgttgagaagaatcacaccaatgtttgatgagtacc |
37763047 |
T |
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| Q |
148 |
at |
149 |
Q |
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|| |
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| T |
37763048 |
at |
37763049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 31330360 - 31330287
Alignment:
| Q |
24 |
gcaacgtagctgaataaggaacatgctgtcatgtgacacatggtgaggaaaattgggtatttgaaaccgtagtt |
97 |
Q |
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| T |
31330360 |
gcaacatagctaaacaaagaacacgctgtcatatgacacatggtgagaaaaataggatacttgaaaccatagtt |
31330287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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