View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_32 (Length: 237)
Name: NF14340_low_32
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_32 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 3238297 - 3238505
Alignment:
| Q |
15 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaattcgctatctatagtaccgctgcagccgctatttaataaattcttccacctaa |
114 |
Q |
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| T |
3238297 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaattcgctatctatagtaccgctgcagccgctatttaataaattcttccacctaa |
3238396 |
T |
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| Q |
115 |
aatgattatctctagtcgccaatcttcaaagttataaaaagaattatagacacaaatgctcgatcaacctgtactttaggtaatgcacaggttggtgagt |
214 |
Q |
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| T |
3238397 |
aatgattatctctagtcgccaatcttcaaagttataaaaagaattatagacacaaatgctcgatcaacctgtactttaggtaatgcacaggttggtgagt |
3238496 |
T |
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| Q |
215 |
gtcacaggt |
223 |
Q |
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||||||||| |
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| T |
3238497 |
gtcacaggt |
3238505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 48198079 - 48198123
Alignment:
| Q |
17 |
tttgtactaattaacatattgcagaacaatagcgattagttcaaa |
61 |
Q |
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| T |
48198079 |
tttgtactaaataacatatcacagaacaatagcgattagttcaaa |
48198123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 16169188 - 16169232
Alignment:
| Q |
18 |
ttgtactaattaacatattgcagaacaatagcgattagttcaaat |
62 |
Q |
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| T |
16169188 |
ttgtactcaatagcatatcgcagaacaatagcgattagttcaaat |
16169232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 39647139 - 39647189
Alignment:
| Q |
14 |
cattttgtactaattaacatattgcagaacaatagcgattagttcaaattc |
64 |
Q |
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| T |
39647139 |
cattttgtactaaatagcatatcgcagaacaataacgatttgttcaaattc |
39647189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 20981318 - 20981269
Alignment:
| Q |
15 |
attttgtactaattaacatattgcagaacaatagcgattagttcaaattc |
64 |
Q |
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||||| |||||| || | |||||||||||||||| ||||||||||||||| |
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| T |
20981318 |
attttatactaaatagcgtattgcagaacaatagtgattagttcaaattc |
20981269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 55314542 - 55314496
Alignment:
| Q |
17 |
tttgtactaattaacatattgcagaacaatagcgattagttcaaatt |
63 |
Q |
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||||||||||||| ||||| ||||||||||||| ||| ||||||||| |
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| T |
55314542 |
tttgtactaattagcatatcgcagaacaatagcaatttgttcaaatt |
55314496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 2732985 - 2732936
Alignment:
| Q |
14 |
cattttgtactaattaacatattgcagaacaatagcgattagttcaaatt |
63 |
Q |
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||||||||||||| || ||||| ||| ||||||||||||| ||||||||| |
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| T |
2732985 |
cattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatt |
2732936 |
T |
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