View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_40 (Length: 216)
Name: NF14340_low_40
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 6184799 - 6184614
Alignment:
| Q |
17 |
caaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaagg |
116 |
Q |
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| T |
6184799 |
caaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaagg |
6184700 |
T |
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| Q |
117 |
aatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttgaagaagtttg |
202 |
Q |
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| T |
6184699 |
aatattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttgaagaagtttg |
6184614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 4235673 - 4235490
Alignment:
| Q |
19 |
aaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaaggaa |
118 |
Q |
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| T |
4235673 |
aaggtaaatgacacattaatattcaatacatttgttctttgtcaagtgtttaatgagtttaatgcaaggaaattggagaagaagaatgtgtttgaaggga |
4235574 |
T |
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| Q |
119 |
tattcaagagcaagttgtttttgggaattattggtgtgacattggtgcttcaagttgtgatggttgagtttttgaagaagtttg |
202 |
Q |
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| T |
4235573 |
tatttaagagcaagttgtttttgggaattgttggtgtgacattggtgcttcaagttgtgatggttgagtttttgaaaaagtttg |
4235490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 30441633 - 30441730
Alignment:
| Q |
18 |
aaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaag |
115 |
Q |
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| T |
30441633 |
aaaggtaaatgacacattgatatttaatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaacaaaaatgtgtttgaag |
30441730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 29475823 - 29475961
Alignment:
| Q |
17 |
caaaggtaaatgacacattgatttt--taatacatttgttctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtctttgaa |
114 |
Q |
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||||||||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29475823 |
caaaggtaaatgacatattgatattcttaatacatttgctctatgtcaagtgtttaatgagtttaatgcaaggaaattggagaaaaagaatgtttttgaa |
29475922 |
T |
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| Q |
115 |
ggaatattcaagagcaagttgtttttgggaattattggt |
153 |
Q |
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| T |
29475923 |
gggatatgtaaaagcaagttgttttagggaaatattggt |
29475961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 19592698 - 19592636
Alignment:
| Q |
18 |
aaaggtaaatgacacattgatttttaatacatttgttctatgtcaagtgtttaatgagtttaa |
80 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19592698 |
aaaggtaaacgacacattgatatttaatacatttgttctatgtcaagtgtttaatgagtttaa |
19592636 |
T |
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