View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14340_low_42 (Length: 215)
Name: NF14340_low_42
Description: NF14340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14340_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 16344373 - 16344454
Alignment:
| Q |
15 |
atgaaaagattttgagggtggaattgctgagttccagattatcttggaccaatctttcttgctattatgagtacagtggaag |
96 |
Q |
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| T |
16344373 |
atgaaaagattttgagggtggaattgctgagttccagattatcttggaccaatctttcttgctattatgagtacagtggaag |
16344454 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 131 - 198
Target Start/End: Original strand, 16344455 - 16344518
Alignment:
| Q |
131 |
gggtgtctttccatatgaacttatcagctttatgcctccaaggaatagtgagtgattttattaatatg |
198 |
Q |
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| T |
16344455 |
gggtgtctttccatatgaacttatcagctttatgcctccaaggaatagtg----attttattaatatg |
16344518 |
T |
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