View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14341_high_2 (Length: 428)
Name: NF14341_high_2
Description: NF14341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14341_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 32729826 - 32729416
Alignment:
| Q |
1 |
cattatctgcaaaaccaaaaaatatttggtattcacaatattaataaatacgagtcaagaaaaataatttgaatattgaggtaatatgaagaaatcaaca |
100 |
Q |
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||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729826 |
cattatctgcaaaaccaaa---tatttggtactcataatattaataaatacgagtcaagaaaaataatttgaatattgaggtaatatgaagaaatcaaca |
32729730 |
T |
|
| Q |
101 |
taatgaaattctgtacacatagaaagtgaggcatattttccctagccatgcat--gtctaactaatttattaattccattataacgtaccttaacactaa |
198 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32729729 |
taatgaaattctgtacacatagaaagtgagacatattttccctagccatgcatatgtctaactaatttattaattcccttataacgtaccttaacactaa |
32729630 |
T |
|
| Q |
199 |
tggttgtagatttgcaaggaccttgaaatgacaaaggttgcaacatgaaattttggccttcgggtatgataagtgtcggggtatttagagttgaaccaca |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
32729629 |
tggttgtagatttgcaaggaccttgaaatgacaaaggttgcaacatgaaattttggccttcgggtatgataagtgtcggggtatctcgagttgaaccaca |
32729530 |
T |
|
| Q |
299 |
cacattttgccatgcattcgtaaaagcctttttgcaagaaagtttaaaaattgtattagatttgaaattttgtttcatatatgaaataagtgtataaaaa |
398 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32729529 |
cacatcttgccatgcattcgtaaaagcctttttgcaagaaagtttaaaagttgtatcagatttgaaattttgtttcatatatgaaataagtatataaaaa |
32729430 |
T |
|
| Q |
399 |
taattgcatgaaat |
412 |
Q |
| |
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|||||||||||||| |
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|
| T |
32729429 |
taattgcatgaaat |
32729416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 147 - 361
Target Start/End: Complemental strand, 38089593 - 38089378
Alignment:
| Q |
147 |
catgcatgtctaactaatttattaattccattataacgtaccttaacactaatggttgtagatttgcaaggaccttgaaatgacaaaggttgcaacatga |
246 |
Q |
| |
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||||||||| ||||||| || ||||||| ||||||| |||| |||| ||| ||||| ||||||||||||||||| |||||| ||||||||||||| | |
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|
| T |
38089593 |
catgcatgtgtaactaaattgttaattcatttataacataccataaccttaacggttgaggatttgcaaggaccttggaatgacgaaggttgcaacataa |
38089494 |
T |
|
| Q |
247 |
aattttggccttcgggtatgataagtgtcggggtatttagagttgaaccacacacattttgccatgcattcgtaaaagcct-ttttgcaagaaagtttaa |
345 |
Q |
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| |||| |||| | ||||| ||||| || || ||| | ||||||||||||| || | ||||||||| ||| ||||||| |||| || ||||||||| |
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| T |
38089493 |
actttttgcctcccggtataataagggttggagtaccttgagttgaaccacatacttcttgccatgctttcaagaaagccttttttacataaaagtttaa |
38089394 |
T |
|
| Q |
346 |
aaattgtattagattt |
361 |
Q |
| |
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||||||| ||| |||| |
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|
| T |
38089393 |
aaattgttttaaattt |
38089378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 277
Target Start/End: Original strand, 19058143 - 19058223
Alignment:
| Q |
197 |
aatggttgtagatttgcaaggaccttgaaatgacaaaggttgcaacatgaaattttggccttcgggtatgataagtgtcgg |
277 |
Q |
| |
|
||||||||| ||||| || ||||||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||| |
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| T |
19058143 |
aatggttgtggatttacatggaccttgaaacgacaaaggttgcaacatgaatgttttgccttcgggtattataagtgtcgg |
19058223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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