View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14341_high_4 (Length: 230)
Name: NF14341_high_4
Description: NF14341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14341_high_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3602955 - 3603176
Alignment:
| Q |
1 |
tcgtatgctttgatttttgtttcttagcttatattaatttttcttctcaagcttgaatagaactttaatcgtgtgtttcaagtgatttgcttttgtacat |
100 |
Q |
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| T |
3602955 |
tcgtatgctttgatttttgtttcttagcttatattaatttttcttctcaagctcgaatagaactttaatcgtgtgtttcaagtgatttacttttgtacat |
3603054 |
T |
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| Q |
101 |
aaattggattttcaaacaacctgcacggctgcacgtgaaccggttcttatgtttaaaacggggttcaaaccagcttggcaccaatttacaatttcaaacc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3603055 |
aaattggattttcaaacaac--------ctgcacgtgaaccggttcttatgtttaaaacggggttcaaaccagtttggcaccaatttacaatttcaaacc |
3603146 |
T |
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| Q |
201 |
gctttacattttttcatgaaatggtttggt |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3603147 |
gctttacattttttcatgaaatggtttggt |
3603176 |
T |
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